Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   RMP65_RS04840 Genome accession   NZ_CP135089
Coordinates   972296..973366 (-) Length   356 a.a.
NCBI ID   WP_029171773.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967296..978366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS04825 (RMP65_04825) braR 968769..969434 (+) 666 WP_313680908.1 response regulator transcription factor Regulator
  RMP65_RS04830 (RMP65_04830) - 969431..970372 (+) 942 WP_313680909.1 sensor histidine kinase -
  RMP65_RS04835 (RMP65_04835) - 970447..971955 (+) 1509 WP_313680910.1 phosphomannomutase/phosphoglucomutase -
  RMP65_RS04840 (RMP65_04840) xerS 972296..973366 (-) 1071 WP_029171773.1 tyrosine recombinase XerS Machinery gene
  RMP65_RS04845 (RMP65_04845) - 973515..974036 (-) 522 WP_029171774.1 AAA family ATPase -
  RMP65_RS04850 (RMP65_04850) - 974102..974842 (-) 741 WP_029171775.1 DUF3307 domain-containing protein -
  RMP65_RS04855 (RMP65_04855) - 974847..975515 (-) 669 WP_029171776.1 SatD family protein -
  RMP65_RS04860 (RMP65_04860) ffh 975709..977283 (-) 1575 WP_002935002.1 signal recognition particle protein -
  RMP65_RS04865 (RMP65_04865) - 977296..977628 (-) 333 WP_002935001.1 putative DNA-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41545.76 Da        Isoelectric Point: 9.3408

>NTDB_id=808935 RMP65_RS04840 WP_029171773.1 972296..973366(-) (xerS) [Streptococcus suis strain ID34567]
MRRELLLEKIDQLKEIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVKLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=808935 RMP65_RS04840 WP_029171773.1 972296..973366(-) (xerS) [Streptococcus suis strain ID34567]
ATGAGACGCGAGTTGTTATTGGAAAAAATTGATCAACTAAAAGAAATCATGCCTTGGTATGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACAACCTTGTATGAATACTTGAAAGAATACCGTCGTTTTTTTGAGTGGTTACAGG
ATTCAGATTTGGTAGCTGTTGAACGAATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACCAAGAAAGATATGGAG
GCTTTTATTCTTTATCTGCGGGAACGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCCCTATCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAACCCTACTTCT
ATCGCAATGTCATGAAGAAGGTGTCCACTAAGAAGAAGAAGGAAACCTTGGCGGCTCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTCGATAAAGAATACCAGGTAAAGTTATCCAAACGTGCCCT
CTCATCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTCAACCTCAATATGATGATCATCGAGGTGACGCGTAAGGGTGGCAAGCGGGACTCG
GTCAATGTGGCTGGCTTTGCTAAACCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCTTATCCGAATACCGCGGTCTGCCCAATCGTATCGACGCTTCTTCTATTGAAAAAATGGTGGCTA
AGTACTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACGCTGGCAACACGGCTCTACGACGCCACC
AAGTCGCAAGTTCTGGTCAGTCATCAGCTAGGACACGCCAATACCCAGGTCACCGACCTCTACACTCATATCGTCAACGA
TGAGCAGAAAAATGCTCTTGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834