Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P4829_RS18140 Genome accession   NZ_CP120846
Coordinates   3581247..3581936 (-) Length   229 a.a.
NCBI ID   WP_277780793.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3576247..3586936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS18105 (P4829_18105) - 3576426..3576908 (-) 483 WP_063638072.1 flagellar protein FlgN -
  P4829_RS18110 (P4829_18110) flgM 3576924..3577184 (-) 261 WP_063638073.1 flagellar biosynthesis anti-sigma factor FlgM -
  P4829_RS18115 (P4829_18115) - 3577264..3577683 (-) 420 WP_063638074.1 TIGR03826 family flagellar region protein -
  P4829_RS18120 (P4829_18120) comFC 3577755..3578477 (-) 723 WP_155729099.1 double zinc ribbon domain-containing protein Machinery gene
  P4829_RS18125 (P4829_18125) - 3578441..3578737 (-) 297 WP_010790084.1 late competence development ComFB family protein -
  P4829_RS18130 (P4829_18130) comFA 3578794..3580191 (-) 1398 WP_063638076.1 ATP-dependent helicase ComFA Machinery gene
  P4829_RS18135 (P4829_18135) - 3580298..3581140 (-) 843 WP_010790086.1 DegV family protein -
  P4829_RS18140 (P4829_18140) degU 3581247..3581936 (-) 690 WP_277780793.1 two-component system response regulator DegU Regulator
  P4829_RS18145 (P4829_18145) degS 3582013..3583176 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  P4829_RS18150 (P4829_18150) - 3583394..3584047 (+) 654 WP_003326713.1 YigZ family protein -
  P4829_RS18155 (P4829_18155) - 3584047..3585303 (+) 1257 WP_063638077.1 LCP family protein -
  P4829_RS18160 (P4829_18160) - 3585394..3586470 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25836.48 Da        Isoelectric Point: 5.9446

>NTDB_id=808877 P4829_RS18140 WP_277780793.1 3581247..3581936(-) (degU) [Bacillus atrophaeus strain MBLB1156]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINTPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=808877 P4829_RS18140 WP_277780793.1 3581247..3581936(-) (degU) [Bacillus atrophaeus strain MBLB1156]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATACGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCCGAATCAAAAGTA
ATTATCTTATCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATTTGCTGAAAGA
AATGGACGCTGATACTTTGATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996