Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P4829_RS18130 Genome accession   NZ_CP120846
Coordinates   3578794..3580191 (-) Length   465 a.a.
NCBI ID   WP_063638076.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3573794..3585191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS18095 (P4829_18095) flgL 3573978..3574874 (-) 897 WP_063638070.1 flagellar hook-associated protein FlgL -
  P4829_RS18100 (P4829_18100) flgK 3574886..3576409 (-) 1524 WP_063638071.1 flagellar hook-associated protein FlgK -
  P4829_RS18105 (P4829_18105) - 3576426..3576908 (-) 483 WP_063638072.1 flagellar protein FlgN -
  P4829_RS18110 (P4829_18110) flgM 3576924..3577184 (-) 261 WP_063638073.1 flagellar biosynthesis anti-sigma factor FlgM -
  P4829_RS18115 (P4829_18115) - 3577264..3577683 (-) 420 WP_063638074.1 TIGR03826 family flagellar region protein -
  P4829_RS18120 (P4829_18120) comFC 3577755..3578477 (-) 723 WP_155729099.1 double zinc ribbon domain-containing protein Machinery gene
  P4829_RS18125 (P4829_18125) - 3578441..3578737 (-) 297 WP_010790084.1 late competence development ComFB family protein -
  P4829_RS18130 (P4829_18130) comFA 3578794..3580191 (-) 1398 WP_063638076.1 ATP-dependent helicase ComFA Machinery gene
  P4829_RS18135 (P4829_18135) - 3580298..3581140 (-) 843 WP_010790086.1 DegV family protein -
  P4829_RS18140 (P4829_18140) degU 3581247..3581936 (-) 690 WP_277780793.1 two-component system response regulator DegU Regulator
  P4829_RS18145 (P4829_18145) degS 3582013..3583176 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  P4829_RS18150 (P4829_18150) - 3583394..3584047 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53047.69 Da        Isoelectric Point: 10.1725

>NTDB_id=808876 P4829_RS18130 WP_063638076.1 3578794..3580191(-) (comFA) [Bacillus atrophaeus strain MBLB1156]
MQTELKKKPLFSADLQQFLHQRHLLRTEIPFSEEIINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKVSALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVGQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRNGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKYAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=808876 P4829_RS18130 WP_063638076.1 3578794..3580191(-) (comFA) [Bacillus atrophaeus strain MBLB1156]
ATGCAGACTGAGTTGAAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAAATTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCGGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGCGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCCTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACATCATCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGGACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGAAAAGAGAAAGTACAGC
AATTCAGGAACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCACCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGAAGGACAGGGCGGCATAAAAA
ATATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(123-270)

Helicase conserved C-terminal domain (Helicase_C)

(326-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.129

100

0.761