Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P4829_RS12780 Genome accession   NZ_CP120846
Coordinates   2544448..2546178 (-) Length   576 a.a.
NCBI ID   WP_063638528.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2539448..2551178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS12760 (P4829_12760) - 2539585..2540703 (+) 1119 WP_155729114.1 NADH-dependent flavin oxidoreductase -
  P4829_RS12765 (P4829_12765) - 2540868..2541725 (+) 858 WP_003325485.1 manganese catalase family protein -
  P4829_RS12770 (P4829_12770) spo0A 2541893..2542690 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  P4829_RS12775 (P4829_12775) spoIVB 2542973..2544253 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  P4829_RS12780 (P4829_12780) recN 2544448..2546178 (-) 1731 WP_063638528.1 DNA repair protein RecN Machinery gene
  P4829_RS12785 (P4829_12785) argR 2546213..2546662 (-) 450 WP_003325480.1 arginine repressor ArgR -
  P4829_RS12790 (P4829_12790) - 2546761..2547606 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -
  P4829_RS12795 (P4829_12795) dxs 2547603..2549504 (-) 1902 WP_003325478.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P4829_RS12800 (P4829_12800) - 2549711..2550601 (-) 891 WP_010789177.1 polyprenyl synthetase family protein -
  P4829_RS12805 (P4829_12805) - 2550591..2550845 (-) 255 WP_063638529.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64532.32 Da        Isoelectric Point: 4.7466

>NTDB_id=808848 P4829_RS12780 WP_063638528.1 2544448..2546178(-) (recN) [Bacillus atrophaeus strain MBLB1156]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSRGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDMVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=808848 P4829_RS12780 WP_063638528.1 2544448..2546178(-) (recN) [Bacillus atrophaeus strain MBLB1156]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAGAGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGCTGTTGGACAAGTTTGCCGGAGAAGAGGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGCTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCATCGGCTGGATTTAATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGCAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCTGACATCAATGAACCGCTGCAAAAACT
TTCTGAAAGTGTCTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACGGTA
GAAGACATTTTGGAATATGCTTCAAAAATTGAAGAAGAAATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATGGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTAGCATCTGGCGGAGAGTTGTCGAGGG
TTATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATTTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCTGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCCAAAGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCGGAAATCGGCCGGATGATTGCCGGAGTCGAAGTGACCGATCTGACCAAACGG
CATGCGAAGGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.104

100

0.901