Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P4829_RS12770 Genome accession   NZ_CP120846
Coordinates   2541893..2542690 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2536893..2547690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS12745 (P4829_12745) - 2537326..2538069 (-) 744 WP_063638525.1 glycerophosphodiester phosphodiesterase -
  P4829_RS12750 (P4829_12750) - 2538181..2538804 (-) 624 WP_063638526.1 N-acetylmuramoyl-L-alanine amidase -
  P4829_RS12755 (P4829_12755) - 2538827..2539129 (-) 303 WP_003325487.1 hypothetical protein -
  P4829_RS12760 (P4829_12760) - 2539585..2540703 (+) 1119 WP_155729114.1 NADH-dependent flavin oxidoreductase -
  P4829_RS12765 (P4829_12765) - 2540868..2541725 (+) 858 WP_003325485.1 manganese catalase family protein -
  P4829_RS12770 (P4829_12770) spo0A 2541893..2542690 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  P4829_RS12775 (P4829_12775) spoIVB 2542973..2544253 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  P4829_RS12780 (P4829_12780) recN 2544448..2546178 (-) 1731 WP_063638528.1 DNA repair protein RecN Machinery gene
  P4829_RS12785 (P4829_12785) argR 2546213..2546662 (-) 450 WP_003325480.1 arginine repressor ArgR -
  P4829_RS12790 (P4829_12790) - 2546761..2547606 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=808847 P4829_RS12770 WP_010789174.1 2541893..2542690(-) (spo0A) [Bacillus atrophaeus strain MBLB1156]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=808847 P4829_RS12770 WP_010789174.1 2541893..2542690(-) (spo0A) [Bacillus atrophaeus strain MBLB1156]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGTCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGACATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATAAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGCATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATTTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974