Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   OO986_RS12630 Genome accession   NZ_AP026552
Coordinates   2695617..2696342 (+) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2690617..2701342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS12615 (VV208B2_23440) clpC 2691092..2693665 (-) 2574 WP_045618377.1 ATP-dependent chaperone ClpB Regulator
  OO986_RS12620 (VV208B2_23450) pgeF 2693783..2694499 (-) 717 WP_175546419.1 peptidoglycan editing factor PgeF -
  OO986_RS12625 (VV208B2_23460) rluD 2694503..2695480 (-) 978 WP_061058276.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OO986_RS12630 (VV208B2_23470) comL 2695617..2696342 (+) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  OO986_RS12635 (VV208B2_23480) hpf 2696694..2697017 (+) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OO986_RS12640 (VV208B2_23490) pheA 2697261..2698439 (+) 1179 WP_011078576.1 prephenate dehydratase -
  OO986_RS12645 (VV208B2_23500) yjjX 2698464..2699000 (+) 537 WP_043920911.1 inosine/xanthosine triphosphatase -
  OO986_RS12650 (VV208B2_23510) trpR 2699031..2699339 (-) 309 WP_011078578.1 trp operon repressor -
  OO986_RS12655 (VV208B2_23520) sltY 2699355..2701310 (-) 1956 WP_108694103.1 murein transglycosylase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=80884 OO986_RS12630 WP_011078574.1 2695617..2696342(+) (comL) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=80884 OO986_RS12630 WP_011078574.1 2695617..2696342(+) (comL) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAAAAAATGGACTGGGTGCT
GTACATGCGTGGTCTCACCCATATGGCACAAGATCGTAACTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACCGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39