Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RMP67_RS03000 Genome accession   NZ_CP135087
Coordinates   592086..592736 (+) Length   216 a.a.
NCBI ID   WP_023371212.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 587086..597736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS02970 (RMP67_02970) amiE 587692..588426 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  RMP67_RS02975 (RMP67_02975) - 588556..589404 (+) 849 WP_029174040.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  RMP67_RS02980 (RMP67_02980) - 589647..589742 (+) 96 WP_313921107.1 YSIRK-type signal peptide-containing protein -
  RMP67_RS02985 (RMP67_02985) - 589880..590092 (+) 213 WP_313921108.1 hypothetical protein -
  RMP67_RS02990 (RMP67_02990) - 590112..590903 (+) 792 WP_313921109.1 hypothetical protein -
  RMP67_RS02995 (RMP67_02995) - 591156..591857 (-) 702 WP_044773119.1 CPBP family intramembrane glutamic endopeptidase -
  RMP67_RS03000 (RMP67_03000) scnR 592086..592736 (+) 651 WP_023371212.1 response regulator transcription factor Regulator
  RMP67_RS03005 (RMP67_03005) - 592738..594126 (+) 1389 WP_313921110.1 HAMP domain-containing sensor histidine kinase -
  RMP67_RS03010 (RMP67_03010) - 594500..595051 (+) 552 WP_313921111.1 isoprenylcysteine carboxyl methyltransferase family protein -
  RMP67_RS03015 (RMP67_03015) - 595260..596168 (-) 909 WP_024413789.1 neutral zinc metallopeptidase -
  RMP67_RS03020 (RMP67_03020) xseA 596335..597678 (+) 1344 WP_313921112.1 exodeoxyribonuclease VII large subunit -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24742.85 Da        Isoelectric Point: 4.7792

>NTDB_id=808829 RMP67_RS03000 WP_023371212.1 592086..592736(+) (scnR) [Streptococcus suis strain ID26102]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=808829 RMP67_RS03000 WP_023371212.1 592086..592736(+) (scnR) [Streptococcus suis strain ID26102]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38