Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RMP67_RS03045 Genome accession   NZ_CP135087
Coordinates   599972..601633 (+) Length   553 a.a.
NCBI ID   WP_313921113.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594972..606633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS03015 (RMP67_03015) - 595260..596168 (-) 909 WP_024413789.1 neutral zinc metallopeptidase -
  RMP67_RS03020 (RMP67_03020) xseA 596335..597678 (+) 1344 WP_313921112.1 exodeoxyribonuclease VII large subunit -
  RMP67_RS03025 (RMP67_03025) - 597653..597868 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  RMP67_RS03030 (RMP67_03030) - 597868..598737 (+) 870 WP_012027575.1 polyprenyl synthetase family protein -
  RMP67_RS03035 (RMP67_03035) - 598730..599551 (+) 822 WP_029172744.1 TlyA family RNA methyltransferase -
  RMP67_RS03040 (RMP67_03040) - 599544..599969 (+) 426 WP_002936261.1 arginine repressor -
  RMP67_RS03045 (RMP67_03045) recN 599972..601633 (+) 1662 WP_313921113.1 DNA repair protein RecN Machinery gene
  RMP67_RS03050 (RMP67_03050) - 601727..602560 (+) 834 WP_002936253.1 DegV family protein -
  RMP67_RS03055 (RMP67_03055) - 602553..603386 (+) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  RMP67_RS03060 (RMP67_03060) - 603358..603954 (+) 597 WP_002936249.1 YpmS family protein -
  RMP67_RS03065 (RMP67_03065) - 604044..604319 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  RMP67_RS03070 (RMP67_03070) - 604668..605135 (+) 468 WP_313921114.1 GNAT family N-acetyltransferase -
  RMP67_RS03075 (RMP67_03075) - 605156..606415 (-) 1260 WP_313921115.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62718.91 Da        Isoelectric Point: 4.6297

>NTDB_id=808830 RMP67_RS03045 WP_313921113.1 599972..601633(+) (recN) [Streptococcus suis strain ID26102]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGATKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNACALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKDLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=808830 RMP67_RS03045 WP_313921113.1 599972..601633(+) (recN) [Streptococcus suis strain ID26102]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCACCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGGCAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAGTCCCAACACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGTAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
CCGCATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTGTGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTAACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTGGACAATCTAGACT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGGACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAACCACTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGTTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAGGAAGGCAAGACTT
CCATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.333

100

0.447