Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ07_RS28935 Genome accession   NZ_CP135086
Coordinates   6491388..6492032 (+) Length   214 a.a.
NCBI ID   WP_313947155.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6486388..6497032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS28915 (RPQ07_28915) - 6487237..6487959 (-) 723 WP_313947151.1 transglycosylase SLT domain-containing protein -
  RPQ07_RS28920 (RPQ07_28920) - 6488238..6489341 (-) 1104 WP_313947152.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  RPQ07_RS28925 (RPQ07_28925) - 6489338..6490033 (-) 696 WP_313947153.1 SDR family oxidoreductase -
  RPQ07_RS28930 (RPQ07_28930) - 6490250..6491395 (+) 1146 WP_313947154.1 GAF domain-containing sensor histidine kinase -
  RPQ07_RS28935 (RPQ07_28935) vraR 6491388..6492032 (+) 645 WP_313947155.1 response regulator transcription factor Regulator
  RPQ07_RS28940 (RPQ07_28940) chpE 6492172..6492420 (+) 249 WP_313947156.1 chaplin ChpE -
  RPQ07_RS28945 (RPQ07_28945) - 6492928..6493707 (-) 780 WP_313947157.1 hypothetical protein -
  RPQ07_RS28950 (RPQ07_28950) - 6493843..6494634 (+) 792 WP_313947158.1 ABC transporter ATP-binding protein -
  RPQ07_RS28955 (RPQ07_28955) - 6494833..6495261 (+) 429 WP_313947159.1 NfeD family protein -
  RPQ07_RS28960 (RPQ07_28960) - 6495353..6496285 (+) 933 WP_313947160.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23226.53 Da        Isoelectric Point: 5.6880

>NTDB_id=808788 RPQ07_RS28935 WP_313947155.1 6491388..6492032(+) (vraR) [Streptomyces sp. AM8-1-1]
MADRTIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAGDGDEGVARAEELKPDVVLMDVKMPGTDGIEALRKLRDLSNPA
RVLIVTSFTEQRTVVPALRAGASGYVYKDVDPEALARAIRSVHAGHVLLQPEVAGALLSQDEPGNGMGRGGSLTEREKEV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTN

Nucleotide


Download         Length: 645 bp        

>NTDB_id=808788 RPQ07_RS28935 WP_313947155.1 6491388..6492032(+) (vraR) [Streptomyces sp. AM8-1-1]
GTGGCTGACAGGACTATTCGCGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGTGGGCTGCGCACCTTCCTCGAGGT
CCAGGACGACATCGAGGTGGTCGGTGAGGCGGGCGACGGGGACGAGGGCGTGGCCCGCGCGGAGGAACTGAAACCGGACG
TCGTCCTGATGGACGTGAAGATGCCCGGCACCGACGGCATCGAGGCCCTGCGCAAGCTGCGTGACCTCTCCAACCCGGCG
CGCGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGGGCCGGCGCTTCGGGCTATGTCTA
CAAGGACGTCGACCCGGAGGCACTCGCCCGCGCCATCCGCTCCGTCCACGCGGGCCATGTACTGCTCCAGCCCGAGGTCG
CGGGCGCGCTGCTGTCCCAGGACGAGCCGGGCAACGGCATGGGCCGCGGGGGTTCGCTCACGGAGCGCGAGAAGGAGGTG
CTCGGCCTGATCGCGGACGGCCGGTCCAACCGCGAGATCGCCCGCGCGCTCGTCCTGTCCGAGAAGACCGTCAAGACGCA
CGTCTCGAACATCCTGATGAAGCTGGACCTCGCGGACCGCACACAGGCGGCGCTGTGGGCCGTACGGCACGGATTGACCA
ATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.755

99.065

0.453
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.393