Detailed information NTG0808778

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RPQ07_RS24470
• Genome accession: NZ_CP135086
• Coordinates: 5446708..5447991 (+)
• Length: 427 a.a.
• NCBI ID: WP_313946325.1
• Uniprot ID: A0ACC6PUA7
• Organism: Streptomyces sp. AM8-1-1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5441708..5452991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RPQ07_RS24435 (RPQ07_24435)	-	5441721..5441915 (+)	195	WP_313946321.1	hypothetical protein	-
RPQ07_RS24440 (RPQ07_24440)	-	5442007..5443029 (+)	1023	WP_313946322.1	alcohol dehydrogenase	-
RPQ07_RS24455 (RPQ07_24455)	tig	5443583..5444977 (+)	1395	WP_313946323.1	trigger factor	-
RPQ07_RS24460 (RPQ07_24460)	-	5445218..5445823 (+)	606	WP_313949012.1	ATP-dependent Clp protease proteolytic subunit	-
RPQ07_RS24465 (RPQ07_24465)	clpP	5445879..5446562 (+)	684	WP_313946324.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RPQ07_RS24470 (RPQ07_24470)	clpX	5446708..5447991 (+)	1284	WP_313946325.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
RPQ07_RS24475 (RPQ07_24475)	-	5448195..5449151 (-)	957	WP_313946326.1	hypothetical protein	-
RPQ07_RS24480 (RPQ07_24480)	-	5449288..5451912 (+)	2625	WP_313946327.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46714.55 Da
• Isoelectric Point: 4.8265

>NTDB_id=808778 RPQ07_RS24470 WP_313946325.1 5446708..5447991(+) (clpX) [Streptomyces sp. AM8-1-1]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGAGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
EDVVHNNVNPTLVPRVVKNEGRHEKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=808778 RPQ07_RS24470 WP_313946325.1 5446708..5447991(+) (clpX) [Streptomyces sp. AM8-1-1]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACGA
GCGAGGTCCGCTGGGAAGAACTTCCCAAGCCTCGTGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTGGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGAGGCGCGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGCTCCGGCAAGACACTGCTGGCCCAGA
CGCTCGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGATACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGTAAGAGCGAAAACCCGTCGATCACGCGGGACGTGTCCGGTGAGGGTGTCCAGCAGGCGC
TGCTGAAGATCCTGGAGGGCACGACGGCCTCGGTCCCGCCCCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCGTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGGGCGGGAGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGCCTCCCCGTACTGACCTCGGTGCACAACCTGGACCGC
GAGGCACTGCTCCAGATCCTGGTCGAGCCGCGGAACGCGCTGGTGAAGCAGTACCAGCGTTTGTTCGAACTCGACGGCGT
GGAGCTGGACTTCGACCGCCCGGCGCTGGAGGCGATCGCGGACCAGGCGATCCTGCGCGGCACGGGCGCGCGTGGCCTGC
GGGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTTCCGTCCCGCAAGGACGTGGCCCGGGTCGTCATCACG
GAGGACGTGGTCCACAACAACGTGAACCCGACGCTGGTGCCGCGGGTCGTGAAGAACGAGGGGCGCCACGAGAAGTCGGC
GTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	94.145	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.269	96.721	0.515