Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ07_RS20375 Genome accession   NZ_CP135086
Coordinates   4496412..4497035 (-) Length   207 a.a.
NCBI ID   WP_313945598.1    Uniprot ID   A0ACC6PWS7
Organism   Streptomyces sp. AM8-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4491412..4502035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS20350 (RPQ07_20350) - 4491851..4492765 (+) 915 WP_313945593.1 aminoglycoside phosphotransferase family protein -
  RPQ07_RS20355 (RPQ07_20355) - 4492876..4493346 (+) 471 WP_313945594.1 GNAT family N-acetyltransferase -
  RPQ07_RS20360 (RPQ07_20360) - 4493365..4494420 (-) 1056 WP_313945595.1 zinc-binding dehydrogenase -
  RPQ07_RS20365 (RPQ07_20365) - 4494512..4495690 (-) 1179 WP_313945596.1 FAD-dependent oxidoreductase -
  RPQ07_RS20370 (RPQ07_20370) - 4495794..4496291 (-) 498 WP_313945597.1 hypothetical protein -
  RPQ07_RS20375 (RPQ07_20375) vraR 4496412..4497035 (-) 624 WP_313945598.1 response regulator transcription factor Regulator
  RPQ07_RS20380 (RPQ07_20380) - 4497202..4498410 (-) 1209 WP_313945599.1 sensor histidine kinase -
  RPQ07_RS20385 (RPQ07_20385) - 4498645..4499202 (+) 558 WP_313945600.1 GlcG/HbpS family heme-binding protein -
  RPQ07_RS20390 (RPQ07_20390) - 4499301..4500704 (+) 1404 WP_313945601.1 M1 family metallopeptidase -
  RPQ07_RS20395 (RPQ07_20395) - 4500864..4501439 (-) 576 WP_266547139.1 TerD family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21846.14 Da        Isoelectric Point: 6.1177

>NTDB_id=808767 RPQ07_RS20375 WP_313945598.1 4496412..4497035(-) (vraR) [Streptomyces sp. AM8-1-1]
MTAVRILLCDDHAVVRAGLLALLASEPDIEVVGEAGSGEEAVAAAAKLRPDVVLMDLQLGPGIDGVEATRRIAAPGVHVL
VLTTYDTDADITRAIEAGATGYLLKAERPEELFSAIHAAAQGRTALSAPVAGRVMDRMRGTGRPTLTDRERDILGQLARG
LANRDIARALFISEATVKTHLGRIYAKLDVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 624 bp        

>NTDB_id=808767 RPQ07_RS20375 WP_313945598.1 4496412..4497035(-) (vraR) [Streptomyces sp. AM8-1-1]
ATGACCGCCGTACGGATCCTCCTCTGCGACGACCACGCCGTCGTACGCGCCGGGCTGCTCGCCCTCCTCGCCAGCGAACC
CGACATCGAGGTCGTCGGCGAAGCGGGCAGCGGCGAGGAAGCCGTCGCCGCTGCCGCGAAGCTCCGGCCCGACGTCGTCC
TCATGGACCTCCAGCTGGGCCCCGGCATCGACGGTGTGGAAGCCACCCGGCGGATCGCCGCACCCGGTGTCCACGTCCTG
GTCCTCACCACGTACGACACCGACGCCGACATCACCCGGGCCATCGAGGCCGGCGCGACGGGCTACCTCCTCAAGGCCGA
GCGGCCCGAAGAACTCTTCTCGGCGATCCACGCCGCCGCCCAGGGCCGCACCGCCCTCTCCGCCCCGGTCGCCGGCCGCG
TCATGGACCGTATGCGCGGCACCGGCCGGCCGACGCTGACCGACCGCGAGCGGGACATCCTCGGCCAGCTCGCACGCGGC
CTCGCCAATCGCGACATCGCCCGCGCGCTGTTCATCAGCGAAGCGACCGTGAAGACCCACCTGGGCCGTATCTACGCCAA
GCTCGACGTGGACACCCGGGCCGGAGCGGTCGCCGTGGCCAAGGAGCAGCGCCTGCTGCCGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-116)

Bacterial regulatory proteins, luxR family (GerE)

(145-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.614

100

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

36.652

100

0.391