Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ07_RS17495 Genome accession   NZ_CP135086
Coordinates   3891530..3892189 (-) Length   219 a.a.
NCBI ID   WP_313945080.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3886530..3897189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS17475 (RPQ07_17475) - 3887024..3887530 (-) 507 WP_313945077.1 GbsR/MarR family transcriptional regulator -
  RPQ07_RS17480 (RPQ07_17480) - 3887624..3888523 (+) 900 WP_313945078.1 ABC transporter ATP-binding protein -
  RPQ07_RS17485 (RPQ07_17485) - 3888520..3890136 (+) 1617 WP_313945079.1 ABC transporter permease -
  RPQ07_RS17490 (RPQ07_17490) - 3890228..3891445 (-) 1218 WP_413777749.1 cytochrome P450 -
  RPQ07_RS17495 (RPQ07_17495) vraR 3891530..3892189 (-) 660 WP_313945080.1 response regulator transcription factor Regulator
  RPQ07_RS17500 (RPQ07_17500) - 3892186..3893556 (-) 1371 WP_391844123.1 histidine kinase -
  RPQ07_RS17505 (RPQ07_17505) - 3893652..3894479 (-) 828 WP_313945081.1 NAD(P)H-binding protein -
  RPQ07_RS17510 (RPQ07_17510) - 3894636..3895505 (-) 870 WP_313945082.1 alpha/beta hydrolase -
  RPQ07_RS17515 (RPQ07_17515) kynU 3895714..3896907 (-) 1194 WP_313945083.1 kynureninase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23627.33 Da        Isoelectric Point: 4.8330

>NTDB_id=808760 RPQ07_RS17495 WP_313945080.1 3891530..3892189(-) (vraR) [Streptomyces sp. AM8-1-1]
MTIRVLVVDDQVMVREGFSVLLNAMPDIEVIGEAVNGREAVSKVAELAPDVVLMDIRMPELNGIEATREIVASHAESKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSKISQTPKPPALSQVGELTERE
TEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 660 bp        

>NTDB_id=808760 RPQ07_RS17495 WP_313945080.1 3891530..3892189(-) (vraR) [Streptomyces sp. AM8-1-1]
ATGACCATCCGGGTCCTTGTCGTCGACGACCAGGTCATGGTCCGTGAAGGCTTCTCCGTCCTGCTGAACGCGATGCCCGA
CATCGAGGTGATCGGCGAGGCGGTCAACGGCCGCGAGGCGGTCTCCAAGGTCGCCGAGCTGGCGCCGGACGTGGTCCTGA
TGGACATCCGTATGCCGGAGCTGAACGGCATCGAGGCCACCCGCGAGATCGTCGCCTCGCACGCGGAGTCGAAGGTGCTC
GTGCTGACCACCTTCGATCTGGACGAGTACGTCTACCAGGCGCTGCGGGCCGGGGCGTCGGGCTTTCTGCTCAAGGACGC
CTCCGCGCGTCAACTGGCCGACGGGGTACGGGTCGTGGCGGCCGGCGAGGCCCTGCTCGCGCCGACCGTGACGCGCCGGC
TGATCACGGAGTTCTCCAAGATCAGCCAGACCCCGAAGCCGCCGGCCCTCTCCCAGGTCGGTGAGCTCACCGAGCGCGAG
ACCGAGGTGCTGGTGCTCATCGCGCAGGGGCTGTCGAACGCGGAGATCGCCTCCCATCTGGTGGTCGCCGAGTCCACGAT
CAAGACGCATGTGAGCCGCGTCCTGGTGAAGCTCGGCCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCGTACGAGGCGA
GGCTGGTCACACCCTCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

98.63

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

99.087

0.411