Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   RPQ07_RS16565 Genome accession   NZ_CP135086
Coordinates   3683085..3684539 (+) Length   484 a.a.
NCBI ID   WP_313944916.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3678085..3689539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS16550 (RPQ07_16550) - 3678176..3679108 (-) 933 WP_313944913.1 Ppx/GppA phosphatase family protein -
  RPQ07_RS16555 (RPQ07_16555) - 3679149..3679952 (+) 804 WP_313944914.1 hypothetical protein -
  RPQ07_RS16560 (RPQ07_16560) - 3681185..3682849 (-) 1665 WP_313944915.1 BACON domain-containing protein -
  RPQ07_RS16565 (RPQ07_16565) radA/sms 3683085..3684539 (+) 1455 WP_313944916.1 DNA repair protein RadA Machinery gene
  RPQ07_RS16570 (RPQ07_16570) disA 3684584..3685708 (+) 1125 WP_313944917.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  RPQ07_RS16575 (RPQ07_16575) - 3685778..3686605 (-) 828 WP_313944918.1 hypothetical protein -
  RPQ07_RS16580 (RPQ07_16580) - 3687183..3688088 (+) 906 WP_313944919.1 A/G-specific adenine glycosylase -
  RPQ07_RS16585 (RPQ07_16585) - 3688273..3688878 (+) 606 WP_313944920.1 SigE family RNA polymerase sigma factor -
  RPQ07_RS16590 (RPQ07_16590) - 3688866..3689537 (+) 672 WP_313944921.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 50923.05 Da        Isoelectric Point: 8.0102

>NTDB_id=808754 RPQ07_RS16565 WP_313944916.1 3683085..3684539(+) (radA/sms) [Streptomyces sp. AM8-1-1]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTIEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTILVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPAGMKVTEVADVGDALRVLPRGRQRGSEGAPVTAPRKERAEAPRDD
DTRR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=808754 RPQ07_RS16565 WP_313944916.1 3683085..3684539(+) (radA/sms) [Streptomyces sp. AM8-1-1]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGATCGAGGAGTACGGCGCGCCCGCCGTCCGCACCACCGCCGCCGGCC
GCGTCTCCACCGCCGCGCTGCCCATCGGCCAGGTCGACGGACGACAGGCGACGGCCCGCTCCACCGGGGTGGACGAGCTC
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCTGTCGTGCTGCTCGCCGGTGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTCGCCGCCAAGGCCGCGAGCGACGAGCACCGGACCCTGTATGTGACGGGCGAGGAATCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCCCTGCACGACCATCTGTATCTGGCGGCCGAGACCGATCTGTCCGCCGTTCTC
GGGCACTTGGACGCGGTCAAGCCGTCGCTGCTGGTCCTCGACTCCGTCCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCGTCCAAGGAGCGCGGGATGTCCACGATCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCGCGGCTGCTGGAGCACCTCGTCGACGTCGTGCTCTCCTTC
GAGGGCGACCGGCACGCGCGGCTGCGTCTCGTACGGGGCGTCAAGAACCGTTACGGAGCGACGGACGAAGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGACTCGCGGACCCCTCGGGCCTGTTCCTGACCCGCCGGGACGCGCCCGTGCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGGCGCCCGCTCGTCGCCGAGGTGCAGGCACTCACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACGACCTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCTCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCGGAGCCCGCGGCGGACCTGG
CGATCGCGCTCGCCCTGGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGTGAGGTCGGCCTC
GCCGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCCGGCTCTCCGAGGCCCACCGTCTCGGCTTCACCCACGCCCTGGT
CCCGTCCGACCCTGGCAAGGTGCCCGCGGGCATGAAGGTGACGGAAGTGGCCGATGTCGGAGACGCTCTGAGGGTGCTGC
CGCGCGGGCGGCAGAGGGGTTCGGAGGGGGCTCCGGTCACGGCACCGCGCAAAGAGCGTGCGGAGGCCCCACGGGACGAC
GACACGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

93.595

0.415
  radA Streptococcus pneumoniae Rx1

42.699

93.388

0.399
  radA Streptococcus pneumoniae D39

42.699

93.388

0.399
  radA Streptococcus pneumoniae R6

42.699

93.388

0.399
  radA Streptococcus pneumoniae TIGR4

42.699

93.388

0.399
  radA Streptococcus mitis SK321

44.159

88.43

0.39
  radA Streptococcus mitis NCTC 12261

44.159

88.43

0.39