Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ07_RS06475 Genome accession   NZ_CP135086
Coordinates   1432503..1433174 (+) Length   223 a.a.
NCBI ID   WP_313943068.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427503..1438174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS06455 (RPQ07_06455) - 1427937..1428821 (+) 885 WP_313943064.1 hypothetical protein -
  RPQ07_RS06460 (RPQ07_06460) - 1429010..1429987 (+) 978 WP_313943065.1 alpha/beta hydrolase -
  RPQ07_RS06465 (RPQ07_06465) - 1429980..1431158 (+) 1179 WP_313943066.1 acyltransferase -
  RPQ07_RS06470 (RPQ07_06470) - 1431169..1432506 (+) 1338 WP_313943067.1 sensor histidine kinase -
  RPQ07_RS06475 (RPQ07_06475) vraR 1432503..1433174 (+) 672 WP_313943068.1 response regulator transcription factor Regulator
  RPQ07_RS06480 (RPQ07_06480) - 1433597..1434211 (+) 615 WP_313943069.1 dihydrofolate reductase family protein -
  RPQ07_RS06485 (RPQ07_06485) - 1434339..1434797 (-) 459 WP_313943070.1 hypothetical protein -
  RPQ07_RS06490 (RPQ07_06490) - 1434962..1435519 (+) 558 WP_313943071.1 GNAT family protein -
  RPQ07_RS06495 (RPQ07_06495) - 1435662..1436222 (-) 561 WP_313943072.1 cysteine hydrolase family protein -
  RPQ07_RS06500 (RPQ07_06500) - 1436352..1436780 (-) 429 WP_313943073.1 hypothetical protein -
  RPQ07_RS06505 (RPQ07_06505) - 1436777..1437190 (-) 414 WP_313943074.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23729.58 Da        Isoelectric Point: 5.1055

>NTDB_id=808725 RPQ07_RS06475 WP_313943068.1 1432503..1433174(+) (vraR) [Streptomyces sp. AM8-1-1]
MTIRVLIADDQMMVRQGFTVLLNAEPGIEVVGQAVDGLDAIAKVAELTPDVVLMDIRMPGLGGIEATGRITGPAGDPAVK
VLVLTTFDLDEYVYEALRAGASGFLLKDASAAELAQAVRVVAAGDALLAPNITKRLIAEFSRVTRTHRAPLMERVGALTE
RETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVYAYETGVVRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=808725 RPQ07_RS06475 WP_313943068.1 1432503..1433174(+) (vraR) [Streptomyces sp. AM8-1-1]
ATGACCATCCGCGTGCTGATCGCGGACGACCAGATGATGGTGCGCCAGGGCTTCACCGTGCTGCTGAACGCCGAGCCGGG
CATCGAGGTCGTCGGCCAGGCCGTGGACGGCCTCGACGCGATCGCCAAGGTGGCCGAACTGACCCCCGACGTCGTCCTCA
TGGACATCCGTATGCCGGGACTGGGCGGGATCGAGGCCACGGGCCGCATCACCGGGCCCGCCGGCGACCCGGCCGTGAAG
GTGCTGGTCCTCACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCGGGGGCCTCCGGCTTTCTGCTCAA
GGACGCGTCGGCCGCCGAGCTGGCGCAGGCGGTACGGGTGGTGGCGGCAGGTGACGCGCTGCTCGCGCCGAACATCACGA
AGCGGCTGATCGCCGAGTTCTCGCGGGTGACCCGCACCCACCGCGCTCCGCTCATGGAGCGCGTCGGAGCTCTGACGGAA
CGCGAGACCGAGGTCCTGGCCCTGATCGCGCAAGGGCTGTCGAACGCCGAGATCGCGACCCGACTGGTCGTGGCGGAGCA
GACCGTGAAGACCCATGTCGGCCGGATTCTGCTGAAGCTGGGTCTGCGCGACCGTACGCAGGCGGCGGTGTACGCGTACG
AAACGGGCGTCGTCCGCCCGGCCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.749

98.206

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

40.889

100

0.413