Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ02_RS35920 Genome accession   NZ_CP135085
Coordinates   8102257..8102916 (-) Length   219 a.a.
NCBI ID   WP_313940718.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8097257..8107916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS35910 (RPQ02_35910) - 8097824..8100691 (+) 2868 WP_313940716.1 hypothetical protein -
  RPQ02_RS35915 (RPQ02_35915) - 8100915..8102090 (+) 1176 WP_313940717.1 hypothetical protein -
  RPQ02_RS35920 (RPQ02_35920) vraR 8102257..8102916 (-) 660 WP_313940718.1 response regulator transcription factor Regulator
  RPQ02_RS35925 (RPQ02_35925) - 8102913..8104067 (-) 1155 WP_313940719.1 sensor histidine kinase -
  RPQ02_RS35930 (RPQ02_35930) - 8104192..8104854 (+) 663 WP_313940720.1 response regulator transcription factor -
  RPQ02_RS35935 (RPQ02_35935) - 8105076..8106305 (+) 1230 WP_313940721.1 amino acid decarboxylase -
  RPQ02_RS35940 (RPQ02_35940) - 8106476..8107255 (+) 780 WP_313941774.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23577.87 Da        Isoelectric Point: 5.3316

>NTDB_id=808709 RPQ02_RS35920 WP_313940718.1 8102257..8102916(-) (vraR) [Streptomyces sp. AM2-3-1]
MTIRVLLADDNEITRRGLTWIMDSSPDIEVCGEAVDGQEAVARAGELQPDVVLLDVRMPRLDGLESIGHLLSLPHPPRIL
MLTTFHEDESVRVALRAGAAGFLLKDTPPDDLLRAIRDVHGGHSALGPPVARRLVDGLADRVSRTDPEEGSRIASLTPRE
HEVLRLLARGLTNTDIASALGMTEGTVKGHVSSILAKLGADSRVQAARIAYRTGLDDQA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=808709 RPQ02_RS35920 WP_313940718.1 8102257..8102916(-) (vraR) [Streptomyces sp. AM2-3-1]
ATGACCATCCGTGTCCTGCTCGCCGACGACAACGAAATCACGCGCCGCGGGCTGACCTGGATCATGGACTCCAGCCCCGA
CATCGAAGTGTGCGGCGAAGCCGTCGACGGCCAGGAGGCGGTGGCCCGGGCCGGGGAGCTCCAGCCGGATGTGGTCCTTC
TCGACGTCCGGATGCCGAGGCTAGACGGACTCGAGTCCATCGGACACCTGCTCAGCCTCCCGCACCCACCGCGGATCCTC
ATGCTCACAACATTCCACGAGGACGAGTCGGTCCGGGTCGCGCTACGGGCCGGGGCGGCCGGTTTCCTGCTCAAGGACAC
GCCGCCCGACGACCTGCTGCGCGCCATCCGGGACGTGCACGGCGGTCATTCCGCGCTCGGCCCACCGGTTGCCCGCCGCC
TGGTGGACGGCCTGGCCGACCGCGTCTCGCGGACCGACCCCGAAGAGGGGAGCCGAATCGCCTCTCTCACCCCGCGTGAG
CACGAGGTGCTCCGGCTGCTCGCACGCGGCCTGACCAATACCGATATCGCCTCCGCGCTCGGCATGACCGAGGGCACGGT
CAAGGGCCACGTCAGCAGCATCCTCGCGAAGCTGGGCGCGGACAGCCGGGTACAGGCCGCGCGGATCGCCTACCGCACGG
GGCTCGACGACCAGGCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.815

98.63

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

36.036

100

0.365