Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ02_RS30840 Genome accession   NZ_CP135085
Coordinates   6924480..6925151 (+) Length   223 a.a.
NCBI ID   WP_313939847.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6919480..6930151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS30825 (RPQ02_30825) - 6921005..6921994 (+) 990 WP_313939844.1 alpha/beta hydrolase -
  RPQ02_RS30830 (RPQ02_30830) - 6921987..6923150 (+) 1164 WP_313939845.1 acyltransferase -
  RPQ02_RS30835 (RPQ02_30835) - 6923176..6924483 (+) 1308 WP_313939846.1 sensor histidine kinase -
  RPQ02_RS30840 (RPQ02_30840) vraR 6924480..6925151 (+) 672 WP_313939847.1 response regulator transcription factor Regulator
  RPQ02_RS30845 (RPQ02_30845) - 6925496..6926953 (-) 1458 WP_313939848.1 catalase -
  RPQ02_RS30850 (RPQ02_30850) - 6927151..6928050 (-) 900 WP_313939849.1 2-hydroxy-3-oxopropionate reductase -
  RPQ02_RS30855 (RPQ02_30855) - 6928096..6928935 (-) 840 WP_313939850.1 TIM barrel protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23965.70 Da        Isoelectric Point: 4.8230

>NTDB_id=808699 RPQ02_RS30840 WP_313939847.1 6924480..6925151(+) (vraR) [Streptomyces sp. AM2-3-1]
MTTIRVLIADDQVMVRQGFTVLLDAEPGIEVVGQAVDGLDAVSKVAELAPDVVLMDVRMPVLGGIEATRRITSPYDAQVK
VLILTTFDLDEYVYEALRAGASGFLLKDASVEELAHAVRVVAAGDALLAPNVTKRLIAEFSRMTAAPRAPLRDRVGDLTE
RETEVLSLIAQGLSNAEIAARLVVAEQTAKTHVSRILAKLGLRDRTQAAVFAYETGLVRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=808699 RPQ02_RS30840 WP_313939847.1 6924480..6925151(+) (vraR) [Streptomyces sp. AM2-3-1]
GTGACGACCATCCGCGTGCTGATCGCCGACGACCAGGTGATGGTCCGTCAGGGCTTTACGGTGCTGCTCGACGCCGAACC
CGGCATCGAGGTCGTGGGTCAGGCGGTGGACGGCCTCGACGCCGTCTCCAAGGTTGCCGAACTCGCCCCGGATGTCGTCC
TGATGGATGTCCGGATGCCCGTGCTCGGCGGTATCGAGGCGACCCGTCGCATCACGTCACCGTACGACGCCCAGGTCAAG
GTGCTCATCCTGACCACCTTCGATCTCGACGAGTACGTGTACGAGGCGCTGCGCGCGGGCGCGTCCGGCTTTCTGCTCAA
GGACGCCTCGGTCGAGGAACTGGCCCATGCGGTGCGGGTGGTGGCAGCCGGCGACGCGCTGCTCGCCCCGAACGTCACCA
AGCGACTGATCGCCGAGTTCTCCCGGATGACCGCCGCGCCCAGGGCTCCGCTCAGGGACCGAGTCGGGGACCTGACCGAA
CGCGAGACAGAGGTGCTGTCCCTGATCGCTCAGGGGTTGTCGAACGCGGAGATCGCCGCACGCCTGGTGGTGGCCGAGCA
GACGGCGAAGACCCACGTGAGCCGGATACTGGCCAAGCTGGGGCTGCGGGACCGGACCCAGGCGGCGGTCTTCGCGTACG
AGACGGGCCTCGTCCGCCCGGCCGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.779

97.309

0.426
  degU Bacillus subtilis subsp. subtilis str. 168

41.85

100

0.426