Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ02_RS29125 Genome accession   NZ_CP135085
Coordinates   6512652..6513332 (+) Length   226 a.a.
NCBI ID   WP_313939562.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6507652..6518332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS29105 (RPQ02_29105) - 6508048..6508281 (-) 234 WP_030927184.1 hypothetical protein -
  RPQ02_RS29110 (RPQ02_29110) - 6508721..6510841 (+) 2121 WP_313939559.1 DNA gyrase/topoisomerase IV subunit B -
  RPQ02_RS29115 (RPQ02_29115) - 6510974..6511492 (+) 519 WP_313939560.1 CcdC protein domain-containing protein -
  RPQ02_RS29120 (RPQ02_29120) - 6511489..6512655 (+) 1167 WP_313939561.1 sensor histidine kinase -
  RPQ02_RS29125 (RPQ02_29125) vraR 6512652..6513332 (+) 681 WP_313939562.1 response regulator transcription factor Regulator
  RPQ02_RS29130 (RPQ02_29130) - 6513464..6513907 (+) 444 WP_267007927.1 DUF485 domain-containing protein -
  RPQ02_RS29135 (RPQ02_29135) - 6513904..6515496 (+) 1593 WP_313939563.1 cation acetate symporter -
  RPQ02_RS29140 (RPQ02_29140) - 6515559..6516236 (-) 678 WP_313939564.1 response regulator -
  RPQ02_RS29145 (RPQ02_29145) - 6516233..6517903 (-) 1671 WP_313939565.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24160.68 Da        Isoelectric Point: 6.1232

>NTDB_id=808696 RPQ02_RS29125 WP_313939562.1 6512652..6513332(+) (vraR) [Streptomyces sp. AM2-3-1]
MTARVVVADDQSVVREGIVMLLGLLPGIEVVGSARDGEEAVALVAERAPDVVLMDLRMPRCDGVEATRRIRKEYPNTQVV
VLTTFAEDESLFPALQAGARGYLTKDAGGDEIVRAIHAVLSGEAGFSPAVQRRLLERVTTAPAPAGPPAAEQQLPDGLTP
REAEVLVLIAEGLSNPEIARKLHISQATVKSHINNLFAKTGVRDRAQAVRYAYVRGLAHPPGTSFT

Nucleotide


Download         Length: 681 bp        

>NTDB_id=808696 RPQ02_RS29125 WP_313939562.1 6512652..6513332(+) (vraR) [Streptomyces sp. AM2-3-1]
GTGACCGCGCGTGTCGTGGTTGCCGACGATCAGTCGGTGGTGCGCGAAGGAATCGTGATGCTGCTGGGGCTGCTGCCAGG
GATCGAGGTGGTGGGATCGGCCAGGGACGGGGAAGAGGCCGTCGCGCTCGTCGCGGAGCGGGCTCCGGATGTGGTTCTGA
TGGACCTCCGCATGCCGCGTTGCGACGGGGTGGAGGCGACGCGGCGCATCCGCAAGGAGTACCCGAACACGCAGGTGGTG
GTGCTCACGACGTTCGCGGAGGACGAGTCGCTCTTCCCCGCACTGCAGGCAGGGGCTCGCGGATATCTCACCAAGGACGC
CGGGGGCGACGAGATCGTGCGGGCCATCCACGCCGTGCTGTCGGGTGAGGCCGGATTCTCGCCCGCGGTGCAGCGGCGGC
TGCTGGAGCGGGTCACCACGGCACCCGCGCCGGCCGGTCCGCCCGCCGCCGAGCAGCAACTGCCCGACGGACTCACGCCC
CGCGAGGCGGAAGTGCTCGTCCTGATCGCCGAGGGACTGTCCAACCCGGAGATCGCCCGCAAGCTGCACATCTCGCAGGC
CACCGTGAAGAGCCACATCAACAATCTCTTCGCCAAGACCGGTGTGCGCGACAGGGCGCAGGCCGTGCGCTATGCGTATG
TTCGCGGGCTCGCACACCCGCCCGGGACATCCTTCACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.014

96.018

0.394
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

97.788

0.372