Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ02_RS21965 Genome accession   NZ_CP135085
Coordinates   4895737..4896363 (-) Length   208 a.a.
NCBI ID   WP_313938515.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4890737..4901363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS21940 (RPQ02_21940) - 4891559..4892032 (+) 474 WP_030933154.1 GNAT family N-acetyltransferase -
  RPQ02_RS21945 (RPQ02_21945) - 4892050..4893051 (-) 1002 WP_313938512.1 zinc-binding dehydrogenase -
  RPQ02_RS21950 (RPQ02_21950) - 4893098..4894297 (-) 1200 WP_313938513.1 NAD(P)-binding protein -
  RPQ02_RS21955 (RPQ02_21955) - 4894398..4895099 (+) 702 WP_313938514.1 pentapeptide repeat-containing protein -
  RPQ02_RS21960 (RPQ02_21960) - 4895126..4895623 (-) 498 WP_030979447.1 hypothetical protein -
  RPQ02_RS21965 (RPQ02_21965) vraR 4895737..4896363 (-) 627 WP_313938515.1 response regulator transcription factor Regulator
  RPQ02_RS21970 (RPQ02_21970) - 4896360..4897670 (-) 1311 WP_313938516.1 sensor histidine kinase -
  RPQ02_RS21975 (RPQ02_21975) - 4897857..4898414 (+) 558 WP_313938517.1 GlcG/HbpS family heme-binding protein -
  RPQ02_RS21980 (RPQ02_21980) - 4898441..4899043 (+) 603 WP_313938518.1 ankyrin repeat domain-containing protein -
  RPQ02_RS21985 (RPQ02_21985) - 4899091..4900497 (+) 1407 WP_406308596.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22086.39 Da        Isoelectric Point: 5.1031

>NTDB_id=808675 RPQ02_RS21965 WP_313938515.1 4895737..4896363(-) (vraR) [Streptomyces sp. AM2-3-1]
MTSPAVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVVLAARLTPDVVLMDLQLGEGIDGVEATRRIAVTGVH
VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRSPLPTLTDRERDILGQLSQ
GLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 627 bp        

>NTDB_id=808675 RPQ02_RS21965 WP_313938515.1 4895737..4896363(-) (vraR) [Streptomyces sp. AM2-3-1]
ATGACCTCGCCCGCCGTACGGATCCTGCTCTGCGACGACCACGCCGTCGTACGTGCCGGACTGCTCGCCCTCCTGGGCAG
CGAACCGGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCCGTCGTCCTGGCCGCCCGGCTGACTCCCGACG
TCGTCCTGATGGACCTCCAACTGGGCGAAGGAATCGACGGCGTCGAAGCCACCCGTCGGATCGCGGTCACCGGCGTCCAT
GTCCTCGTCCTCACGACGTACGACACGGACGCCGACATCACCCGCGCCATCGAAGCGGGCGCCACCGGCTATCTGCTGAA
GGCGGAACGCCCGGAGGAACTGTTCGCCGCGATCCGCTCGGCGGCCCAGGGACGCACCACGCTCTCCCCACCGGTTGCCA
GCCGTGTCATGGCCCGCATGCGCAGTCCCCTGCCGACGCTCACCGACCGCGAACGCGACATCCTCGGCCAACTGTCCCAG
GGCCTGGGCAACCGGGACATCGCCCGGGCCCTGTTCATCAGCGAGGCCACGGTCAAGACGCACCTGGGCCGTATCTACGA
CAAGCTCGGCGTCGACACCCGCGCGGGCGCCGTGTCCGTGGCGAAGGAGCAGCGGCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.13

99.519

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

35.78

100

0.375