Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   RPQ02_RS17915 Genome accession   NZ_CP135085
Coordinates   4018968..4020380 (+) Length   470 a.a.
NCBI ID   WP_313937905.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4013968..4025380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS17900 (RPQ02_17900) - 4015068..4016015 (-) 948 WP_313937902.1 Ppx/GppA phosphatase family protein -
  RPQ02_RS17905 (RPQ02_17905) - 4016056..4016925 (+) 870 WP_313937903.1 hypothetical protein -
  RPQ02_RS17910 (RPQ02_17910) - 4016958..4018727 (-) 1770 WP_313937904.1 BACON domain-containing protein -
  RPQ02_RS17915 (RPQ02_17915) radA/sms 4018968..4020380 (+) 1413 WP_313937905.1 DNA repair protein RadA Machinery gene
  RPQ02_RS17920 (RPQ02_17920) disA 4020461..4021585 (+) 1125 WP_313937906.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  RPQ02_RS17925 (RPQ02_17925) - 4021746..4022555 (-) 810 WP_313937907.1 hypothetical protein -
  RPQ02_RS17930 (RPQ02_17930) - 4023410..4024312 (+) 903 WP_313937908.1 A/G-specific adenine glycosylase -
  RPQ02_RS17935 (RPQ02_17935) - 4024488..4025138 (+) 651 WP_313937909.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49680.85 Da        Isoelectric Point: 8.2640

>NTDB_id=808663 RPQ02_RS17915 WP_313937905.1 4018968..4020380(+) (radA/sms) [Streptomyces sp. AM2-3-1]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTAEESASQVRLRADRIRAINDHLFLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPPGMKVTEVANMGDALRVLPRRSRTEPPREADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=808663 RPQ02_RS17915 WP_313937905.1 4018968..4020380(+) (radA/sms) [Streptomyces sp. AM2-3-1]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACGACGGCGGCCG
GCCGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTGGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCGGGCGCCGTGGTGCTGCTCGCGGGCGAGCCGGGTGTCGGAAAGTCGAC
GCTCCTGCTGGATGTGGCCGCCAAGGCAGCCAGCGAGGAGCACCGCACCCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTCTTCCTCGCAGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGAGGG
CGCACCCGGCGGGATGGCACAGGTCCGGGAGGTCGCCGGTGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCGCGGCTGCTGGAGCACCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGGCATGCGCGCCTCCGACTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGTCCGGCCTCTTCCTCACCCGGCGCGACGAACCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCCTCACCGCGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGAGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTCTCCGAACCCGCCGCGGACC
TTGCGATCGCGCTTGCGCTGGCCAGTGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCAGGCGAGGTCAGAAGGGTTACGGGGGTGCAGCGCAGACTGGCCGAGGCACACCGCCTGGGCTTCACCCACGCACT
GGTCCCGACCGACCCGGGGAGGGTTCCACCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTGAGAGTGC
TCCCGCGCCGGTCTCGTACAGAGCCCCCACGGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus mitis NCTC 12261

42.605

96.383

0.411
  radA Streptococcus mitis SK321

42.605

96.383

0.411
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406