Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RPQ02_RS07075 Genome accession   NZ_CP135085
Coordinates   1558158..1558808 (+) Length   216 a.a.
NCBI ID   WP_313936180.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553158..1563808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS07050 (RPQ02_07050) mug 1554006..1554563 (+) 558 WP_313936176.1 G/U mismatch-specific DNA glycosylase -
  RPQ02_RS07055 (RPQ02_07055) - 1554637..1555074 (-) 438 WP_313936177.1 hypothetical protein -
  RPQ02_RS07060 (RPQ02_07060) - 1555194..1555937 (-) 744 WP_313941478.1 ABC transporter permease -
  RPQ02_RS07065 (RPQ02_07065) - 1555934..1556872 (-) 939 WP_313936178.1 ABC transporter ATP-binding protein -
  RPQ02_RS07070 (RPQ02_07070) - 1556981..1558153 (+) 1173 WP_313936179.1 sensor histidine kinase -
  RPQ02_RS07075 (RPQ02_07075) vraR 1558158..1558808 (+) 651 WP_313936180.1 response regulator transcription factor Regulator
  RPQ02_RS07080 (RPQ02_07080) - 1558908..1560065 (+) 1158 WP_313936181.1 ROK family protein -
  RPQ02_RS07085 (RPQ02_07085) - 1560114..1560881 (-) 768 WP_313936182.1 GntR family transcriptional regulator -
  RPQ02_RS07090 (RPQ02_07090) - 1561147..1562031 (-) 885 WP_313936183.1 RNA polymerase sigma-70 factor -
  RPQ02_RS07095 (RPQ02_07095) - 1562223..1563053 (+) 831 WP_313936184.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23105.03 Da        Isoelectric Point: 7.3208

>NTDB_id=808643 RPQ02_RS07075 WP_313936180.1 1558158..1558808(+) (vraR) [Streptomyces sp. AM2-3-1]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIKVVGEAADGAAVIPLVHRLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTSKARAVMKRASLTEREAAV
LRLMARGLSNAEIAAKLVVGVETVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=808643 RPQ02_RS07075 WP_313936180.1 1558158..1558808(+) (vraR) [Streptomyces sp. AM2-3-1]
ATGCCGGTTACCGTTCTCCTGGTCGACGACGAACCTCTCGTACGCGCGGGGCTGCGCGCGGTCCTTGAGGCTCAGCCCGA
TATCAAGGTGGTGGGCGAGGCCGCCGACGGCGCGGCAGTGATCCCGCTGGTGCACAGGTTGCGCCCCGATGTGGTCGCGA
TGGATGTGCGGATGCCCTTGATGGACGGCATCGAGGCGACCCGGGTGGTGCTGCGCACGGTGCCGGATCCGCCGAAGATC
CTGGTGGTGACGACATTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCGGACGGCTTCCTGCTCAAGCG
CGCCCGGCCTGCGGAGATCGTGCATGCGGTGCGCCTGGTCGCCGAGGGGGAGTCCCTGCTGTTCCCGGCCGCGGTCCGGC
AGCTCGCCGCCGAGTACGGGACGAGCAAGGCGAGGGCGGTCATGAAGCGGGCATCGCTCACCGAGCGCGAGGCTGCGGTG
CTCCGGTTGATGGCGCGGGGACTGTCGAATGCGGAGATCGCCGCCAAACTCGTGGTCGGCGTCGAGACGGTGAAGACCCA
TGTCAGCGCGGTGCTGGCCAAGTTGGGGGCCAGGGATCGGACCCAGGCGGTGATCGCCGCGTACGAGTCCGGGTTCGTGG
CTCCGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.723

98.611

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.375