Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P4692_RS04090 Genome accession   NZ_CP120736
Coordinates   837590..838180 (-) Length   196 a.a.
NCBI ID   WP_277755070.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain A5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 832590..843180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4692_RS04060 - 832924..833349 (+) 426 WP_005690370.1 hypothetical protein -
  P4692_RS04065 - 833428..833622 (-) 195 WP_277755067.1 hypothetical protein -
  P4692_RS04070 cydB 833662..834681 (-) 1020 WP_277755068.1 cytochrome d ubiquinol oxidase subunit II -
  P4692_RS04075 - 834674..836152 (-) 1479 WP_277755069.1 cytochrome ubiquinol oxidase subunit I -
  P4692_RS04080 - 836463..836969 (+) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  P4692_RS04085 rpsR 837262..837498 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  P4692_RS04090 ssb 837590..838180 (-) 591 WP_277755070.1 single-stranded DNA-binding protein Machinery gene
  P4692_RS04095 rpsF 838210..838506 (-) 297 WP_005685677.1 30S ribosomal protein S6 -
  P4692_RS04100 ssb 838633..839064 (-) 432 WP_005690380.1 single-stranded DNA-binding protein -
  P4692_RS04105 - 839174..839260 (+) 87 Protein_780 deoxyribose-phosphate aldolase -
  P4692_RS04110 - 839388..839837 (-) 450 WP_204987108.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  P4692_RS04115 - 839860..841275 (-) 1416 WP_019728464.1 IS5-like element ISLrh2 family transposase -
  P4692_RS04120 - 841579..841809 (-) 231 WP_005690384.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20919.70 Da        Isoelectric Point: 5.2151

>NTDB_id=808489 P4692_RS04090 WP_277755070.1 837590..838180(-) (ssb) [Lacticaseibacillus rhamnosus strain A5]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQKPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=808489 P4692_RS04090 WP_277755070.1 837590..838180(-) (ssb) [Lacticaseibacillus rhamnosus strain A5]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAAACCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5