Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P7C01_RS28665 Genome accession   NZ_CP120725
Coordinates   6373406..6375637 (-) Length   743 a.a.
NCBI ID   WP_213664956.1    Uniprot ID   -
Organism   Pseudomonas danubii strain JDS10PS014     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6368406..6380637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C01_RS28630 (P7C01_28525) murB 6368783..6369802 (-) 1020 WP_404941693.1 UDP-N-acetylmuramate dehydrogenase -
  P7C01_RS28635 (P7C01_28530) - 6369799..6370263 (-) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  P7C01_RS28640 (P7C01_28535) kdsB 6370263..6371027 (-) 765 WP_110595197.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P7C01_RS28645 (P7C01_28540) - 6371024..6371209 (-) 186 WP_011060103.1 Trm112 family protein -
  P7C01_RS28650 (P7C01_28545) lpxK 6371233..6372243 (-) 1011 WP_102878921.1 tetraacyldisaccharide 4'-kinase -
  P7C01_RS28655 (P7C01_28550) - 6372243..6372671 (-) 429 WP_102863926.1 biopolymer transporter ExbD -
  P7C01_RS28660 (P7C01_28555) exbB 6372668..6373303 (-) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P7C01_RS28665 (P7C01_28560) comA 6373406..6375637 (-) 2232 WP_213664956.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P7C01_RS28670 (P7C01_28565) - 6375777..6376292 (+) 516 WP_102863929.1 DUF2062 domain-containing protein -
  P7C01_RS28675 (P7C01_28570) - 6376346..6377125 (-) 780 WP_102863930.1 ABC transporter permease -
  P7C01_RS28680 (P7C01_28575) - 6377122..6378054 (-) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  P7C01_RS28685 (P7C01_28580) - 6378187..6378810 (-) 624 WP_404941694.1 glutathione S-transferase -
  P7C01_RS28690 (P7C01_28585) - 6378853..6379512 (-) 660 WP_213664955.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81424.85 Da        Isoelectric Point: 10.6603

>NTDB_id=808448 P7C01_RS28665 WP_213664956.1 6373406..6375637(-) (comA) [Pseudomonas danubii strain JDS10PS014]
MVTGMLALAAGLLALGFMPVLPPGWLLLLMVIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVVGLPEPGASVVRFELKDAQSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRLLAVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAGLARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGLWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLHKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSASCDSGLSWHWNGARFTLWQWTGAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLGSPLAVRIHWLQAPHHGSRTSSSMALLRRLTPKAVLISRGQGNAFGHPHPQVVARYRQLGMVIHDSAEQGALKLRL
GTFGQPESLRQQRRFWRDWPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=808448 P7C01_RS28665 WP_213664956.1 6373406..6375637(-) (comA) [Pseudomonas danubii strain JDS10PS014]
ATGGTTACAGGGATGCTGGCCCTGGCCGCAGGACTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGTGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCGCCTGCCTCAGTCCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGAGCGTGGTGCGCTTTGAGCTCAAGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCGGCGAATTCGCCTGGCCTGGCACGGTGGGCCACCCGTCAATAGCGGGGAACGTTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCACCGGC
ACAGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCAAGCCTGGCGTGACGGTCTGCGCCAGCGTTTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGTCTGCTGGCCGCAGTGATCTACCTTGCA
GTGGCAGGGCTGGCTCGTTACGGGCTTTGGCCCGCGCGTTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTACAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCACCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCACCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCTTATGTGGGTGAAGGGCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTATGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCCTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGCTGTTGCTGTTGGCCGTC
TGGCCTCCCCAGGACCCGGTACCCGAGGGCGAGGTGGAGATCTGGCAGTTGGATGTGGGGCAGGGGTTGTCGTTCATTCT
GCGTACCCGTGATCACGCGATGTTGTATGACGCCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCATAAACTTGGCATTCGACGGTTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCTGAGGCCTTGCCGGCTGCCCTGCAGTCGGC
CTCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCCCGCTTCACGCTGTGGCAGTGGACGGGGGCGGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATCGATGTCCATGCTGAG
CGGGCTTTGCTCGGCAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCGTC
CATGGCCTTGCTCCGGCGGTTGACGCCGAAGGCGGTGCTGATTTCCCGGGGGCAGGGCAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCAATTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGCGCACTGAAGCTGCGGCTG
GGGACTTTCGGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGACTGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.877

96.501

0.616