Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   P7C01_RS11745 Genome accession   NZ_CP120725
Coordinates   2555782..2557110 (-) Length   442 a.a.
NCBI ID   WP_306400034.1    Uniprot ID   -
Organism   Pseudomonas danubii strain JDS10PS014     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2550782..2562110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C01_RS11710 (P7C01_11675) - 2551171..2551695 (-) 525 WP_102882256.1 GspH/FimT family protein -
  P7C01_RS11715 (P7C01_11680) pilV 2552086..2552517 (+) 432 WP_404942157.1 type IV pilus modification protein PilV -
  P7C01_RS11720 (P7C01_11685) - 2552526..2553236 (+) 711 WP_404942158.1 PilW family protein -
  P7C01_RS11725 (P7C01_11690) - 2553278..2553718 (+) 441 WP_213665054.1 PilX N-terminal domain-containing pilus assembly protein -
  P7C01_RS11730 (P7C01_11695) - 2553705..2554211 (+) 507 WP_404942159.1 hypothetical protein -
  P7C01_RS11735 (P7C01_11700) - 2554227..2554628 (+) 402 WP_102882252.1 type IV pilin protein -
  P7C01_RS11740 (P7C01_11705) thiO 2554685..2555785 (+) 1101 WP_110652086.1 glycine oxidase ThiO -
  P7C01_RS11745 (P7C01_11710) pilR 2555782..2557110 (-) 1329 WP_306400034.1 sigma-54 dependent transcriptional regulator Regulator
  P7C01_RS11750 (P7C01_11715) - 2557261..2557494 (-) 234 WP_102882404.1 PP0621 family protein -
  P7C01_RS11755 (P7C01_11720) - 2557619..2558641 (-) 1023 WP_102882249.1 outer membrane protein assembly factor BamD -
  P7C01_RS11760 (P7C01_11725) rluD 2558792..2559754 (+) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P7C01_RS11765 (P7C01_11730) pgeF 2559751..2560476 (+) 726 WP_102882248.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49742.47 Da        Isoelectric Point: 8.0115

>NTDB_id=808438 P7C01_RS11745 WP_306400034.1 2555782..2557110(-) (pilR) [Pseudomonas danubii strain JDS10PS014]
MNPMPRVLVVDEAMEVRALVEITLGRMRLHTQSARTLQEARTHLARERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPGTQASALEVGACDLLHKPLHPMRLREWISSRLKRLPTTTKNLPDHQLLGHSPPMDNLRQHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALRERPGDIEILARHILQ
RLAKSSDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDVPSPSLPPNLDLALHLQ
QVERHLLLQALEESRWNRTMAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=808438 P7C01_RS11745 WP_306400034.1 2555782..2557110(-) (pilR) [Pseudomonas danubii strain JDS10PS014]
ATGAACCCAATGCCCAGGGTGCTGGTGGTCGATGAGGCCATGGAAGTCCGTGCCCTCGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCTCGGACTCACCTGGCCCGGGAGCGCTTCGACCTGTGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAATGACCCAGGCACGCAGGCCAGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCTCTACACCC
CATGCGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCACCACAAAAAACCTACCCGACCATCAGTTGT
TGGGACATTCACCACCCATGGACAACCTGCGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAGCGAGTGGCGCGTTTGATCCACCAGTTGGGTCCCAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGTGCCATTCCTGGCGAACTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TGGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGGGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTAGCC
ATGCAGGTGAAGCTACTGCGTGCACTGCAGGAAAGGTCTGTGCGCCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGTGTGAGGTAGAGTCCGGCCGCTTTCGCCAGGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTCCCCGCGCTGCGCGAGCGCCCAGGAGATATCGAGATACTGGCGCGGCATATTCTGCAA
CGCCTGGCCAAATCCAGCGACAAGCCTGCCACCCAACTAAGCCCGCAAGCACTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAGAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCGTGGATCGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACGTCCCGTCCCCCTCGCTCCCTCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTACTGCTCCAGGCCCTGGAGGAAAGCCGCTGGAACCGCACGATGGCGGCCCGACGGCTGAGCCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGCCTGAATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(133-299)

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(7-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.851

100

0.62
  pilR Acinetobacter baumannii strain A118

44.156

100

0.462