Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P7C00_RS09685 Genome accession   NZ_CP120724
Coordinates   2116293..2116928 (+) Length   211 a.a.
NCBI ID   WP_025128684.1    Uniprot ID   -
Organism   Pseudomonas sp. JDS08PS003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2111293..2121928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C00_RS09665 (P7C00_09620) - 2111542..2112474 (+) 933 WP_346631912.1 ABC transporter ATP-binding protein -
  P7C00_RS09670 (P7C00_09625) - 2112471..2113250 (+) 780 WP_102863930.1 ABC transporter permease -
  P7C00_RS09675 (P7C00_09630) - 2113304..2113819 (-) 516 WP_346631911.1 DUF2062 domain-containing protein -
  P7C00_RS09680 (P7C00_09635) comA 2113959..2116190 (+) 2232 WP_404938764.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P7C00_RS09685 (P7C00_09640) exbB 2116293..2116928 (+) 636 WP_025128684.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P7C00_RS09690 (P7C00_09645) - 2116925..2117353 (+) 429 WP_346631909.1 biopolymer transporter ExbD -
  P7C00_RS09695 (P7C00_09650) lpxK 2117353..2118363 (+) 1011 WP_346631908.1 tetraacyldisaccharide 4'-kinase -
  P7C00_RS09700 (P7C00_09655) - 2118387..2118572 (+) 186 WP_011060103.1 Trm112 family protein -
  P7C00_RS09705 (P7C00_09660) kdsB 2118569..2119333 (+) 765 WP_346631907.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P7C00_RS09710 (P7C00_09665) - 2119333..2119797 (+) 465 WP_123725733.1 low molecular weight protein-tyrosine-phosphatase -
  P7C00_RS09715 (P7C00_09670) murB 2119794..2120813 (+) 1020 WP_346631906.1 UDP-N-acetylmuramate dehydrogenase -
  P7C00_RS09720 (P7C00_09675) - 2121065..2121535 (+) 471 WP_317072079.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.12 Da        Isoelectric Point: 7.3617

>NTDB_id=808407 P7C00_RS09685 WP_025128684.1 2116293..2116928(+) (exbB) [Pseudomonas sp. JDS08PS003]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=808407 P7C00_RS09685 WP_025128684.1 2116293..2116928(+) (exbB) [Pseudomonas sp. JDS08PS003]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGTTGGGTCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAAAAACTCAAGGAGCTGCGTGCCGATTCGCCCCTGGGAGAGATTCTGGCGGCGGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCGGCCCGGGTCATTCACGAACTGGAACGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCCCTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGGTCGGGGATGACCACCAACGCCGCAGTCCTTGCCGGTGGTATTTCCAAGGCACTGATCACCACGGCT
GCAGGCTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877