Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P7C00_RS09680 Genome accession   NZ_CP120724
Coordinates   2113959..2116190 (+) Length   743 a.a.
NCBI ID   WP_404938764.1    Uniprot ID   -
Organism   Pseudomonas sp. JDS08PS003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2108959..2121190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C00_RS09655 (P7C00_09610) - 2110084..2110743 (+) 660 WP_346631914.1 transglutaminase family protein -
  P7C00_RS09660 (P7C00_09615) - 2110786..2111409 (+) 624 WP_404938762.1 glutathione S-transferase family protein -
  P7C00_RS09665 (P7C00_09620) - 2111542..2112474 (+) 933 WP_346631912.1 ABC transporter ATP-binding protein -
  P7C00_RS09670 (P7C00_09625) - 2112471..2113250 (+) 780 WP_102863930.1 ABC transporter permease -
  P7C00_RS09675 (P7C00_09630) - 2113304..2113819 (-) 516 WP_346631911.1 DUF2062 domain-containing protein -
  P7C00_RS09680 (P7C00_09635) comA 2113959..2116190 (+) 2232 WP_404938764.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P7C00_RS09685 (P7C00_09640) exbB 2116293..2116928 (+) 636 WP_025128684.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P7C00_RS09690 (P7C00_09645) - 2116925..2117353 (+) 429 WP_346631909.1 biopolymer transporter ExbD -
  P7C00_RS09695 (P7C00_09650) lpxK 2117353..2118363 (+) 1011 WP_346631908.1 tetraacyldisaccharide 4'-kinase -
  P7C00_RS09700 (P7C00_09655) - 2118387..2118572 (+) 186 WP_011060103.1 Trm112 family protein -
  P7C00_RS09705 (P7C00_09660) kdsB 2118569..2119333 (+) 765 WP_346631907.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P7C00_RS09710 (P7C00_09665) - 2119333..2119797 (+) 465 WP_123725733.1 low molecular weight protein-tyrosine-phosphatase -
  P7C00_RS09715 (P7C00_09670) murB 2119794..2120813 (+) 1020 WP_346631906.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81103.53 Da        Isoelectric Point: 10.7483

>NTDB_id=808406 P7C00_RS09680 WP_404938764.1 2113959..2116190(+) (comA) [Pseudomonas sp. JDS08PS003]
MAMAMLALAAGLLALGFMPVLPPGWLLLLMAIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVLGLPEPGAGVVRFELKDAQSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRVLEVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAGVIYLA
VAGLARYGLWPARWPWLPWACALAFGGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSFVAVAVLIFTFAGRLGTWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGLWPAWVAPLIPLWFWGISSLGALLLLLPKGVPMRVLGWPLLLLAV
WPPQDPVPEGEVEVWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLRKLGIQRLDLMLLSHADNDHAGGA
LAVQRGLPVSQVRSGEPGALPAALQSAPCDSGLSWGWNGARFTLWQWAAAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPQVVARYRQLGVAIHDSAEQGALKLRL
GAFGQPESLRQQRRFWRDLPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=808406 P7C00_RS09680 WP_404938764.1 2113959..2116190(+) (comA) [Pseudomonas sp. JDS08PS003]
ATGGCTATGGCGATGCTGGCGTTGGCCGCAGGGCTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTCTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTAGATGATCGCCTGCCTCAGTCTCTGGATGGGCAAACCCGTTGGCTGGAAGGG
CGGGTGCTCGGCTTGCCGGAACCGGGAGCGGGCGTGGTGCGCTTTGAGCTCAAGGATGCCCAGTCTCGACGAGAACGCCT
GCCACGGCGAATTCGCCTGGCCTGGCACGGTGGGCCGCCCGTCAATAGCGGCGAGCGCTGGCGCTTGGCGGTCAAGCTGC
GGCGGCCTGCGGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGTTGTTGGCCCGGCGTATTGGGGCCACCGGC
ACGGTCAAGGACGGACAACTGCTGGCGCCGGCTCGTCAGGCCTGGCGTGACGGTCTGCGCCAGCGTGTACTTGAGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCGTTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGGCAGCACATCAGCCTGTTGGCTGGAGTGATCTACCTTGCA
GTGGCAGGGCTGGCCCGTTACGGACTCTGGCCCGCGCGCTGGCCCTGGCTGCCCTGGGCTTGTGCCCTGGCCTTTGGCGG
GGCACTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCCTGCGTGATGGTGGCGCTGGTGCTGCTCT
GGCGCTTGCGCTTTCGTCATCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCTGGGTTCTGGCTGTCCTTTGTGGCGGTGGCGGTACTCATCTTCACCTTTGCCGGGCGCCTGGGCAC
CTGGCGCTGGTGGCAGAGCTGGACCCGTGCCCAGTGGCTGATGGGTATCGGCCTGTTGCCGCCATTGCTGGCCCTTGGCT
TACCCATCAGTCTCAGTGGTCCGTTGGCCAATCTGCTGGCCGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCGTTG
CTGGGCTGTCTGTTGCTGCCTGTGCCTTATGTGGGCGAAGGCCTGTTATGGCTGGCGGGGGGCTTGCTGGATGGGTTGTT
CCGGTTATTGGGGGCGATGGCCGGATTATGGCCAGCCTGGGTGGCGCCGTTGATACCCCTTTGGTTTTGGGGCATCAGCA
GCTTGGGGGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCAATGCGGGTGCTGGGTTGGCCGCTGTTGCTGCTGGCGGTC
TGGCCTCCCCAGGACCCCGTGCCCGAGGGAGAGGTGGAGGTCTGGCAGTTGGATGTGGGGCAGGGGTTGTCGTTTATCCT
GCGTACCCGTGATCACGCGATGTTGTATGACGCCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCGTAAGCTTGGCATTCAACGGCTGGACTTGATGCTGCTCAGCCATGCCGATAACGATCATGCCGGTGGCGCC
CTGGCAGTCCAGCGCGGGCTACCGGTGAGCCAGGTGCGCAGTGGTGAGCCCGGGGCCTTGCCCGCCGCCCTGCAATCAGC
CCCCTGTGATAGCGGACTGAGCTGGGGCTGGAATGGTGCACGCTTCACTCTTTGGCAGTGGGCGGCGGCTGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATCGACGTCCATGCTGAG
CGGGCCTTGCTCGACAGTCCGCTGGCGGTTCGCACTCATTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCGTC
CATGGCCTTGCTCCGGCGGCTGGCACCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGCAATGCCTTTGGCCATCCTCACC
CCCAGGTGGTGGCGCGCTACCGGCAACTGGGCGTGGCGATCCATGACAGTGCCGAGCAAGGCGCACTGAAGCTACGACTG
GGGGCTTTCGGGCAGCCTGAAAGCCTGCGGCAACAGCGGCGTTTCTGGCGCGACTTGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.435

96.501

0.622