Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P3T49_RS18070 Genome accession   NZ_CP120723
Coordinates   3568643..3569332 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain NX-12     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3563643..3574332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS18035 - 3563827..3564309 (-) 483 WP_277713955.1 flagellar protein FlgN -
  P3T49_RS18040 flgM 3564325..3564585 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  P3T49_RS18045 - 3564665..3565084 (-) 420 WP_010790082.1 TIGR03826 family flagellar region protein -
  P3T49_RS18050 - 3565156..3565873 (-) 718 Protein_3523 amidophosphoribosyltransferase -
  P3T49_RS18055 - 3565837..3566133 (-) 297 WP_277713957.1 late competence development ComFB family protein -
  P3T49_RS18060 comFA 3566190..3567587 (-) 1398 WP_277713958.1 ATP-dependent helicase ComFA Machinery gene
  P3T49_RS18065 - 3567694..3568536 (-) 843 WP_277713959.1 DegV family protein -
  P3T49_RS18070 degU 3568643..3569332 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P3T49_RS18075 degS 3569409..3570572 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  P3T49_RS18080 - 3570790..3571443 (+) 654 WP_277713960.1 YigZ family protein -
  P3T49_RS18085 - 3571443..3572666 (+) 1224 WP_277713961.1 LCP family protein -
  P3T49_RS18090 - 3572757..3573833 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=808392 P3T49_RS18070 WP_003219701.1 3568643..3569332(-) (degU) [Bacillus atrophaeus strain NX-12]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=808392 P3T49_RS18070 WP_003219701.1 3568643..3569332(-) (degU) [Bacillus atrophaeus strain NX-12]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCCGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATTTGCTGAAAGA
AATGGACGCTGATACTTTGATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1