Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P3T49_RS18060 Genome accession   NZ_CP120723
Coordinates   3566190..3567587 (-) Length   465 a.a.
NCBI ID   WP_277713958.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3561190..3572587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS18025 flgL 3561379..3562275 (-) 897 WP_063638070.1 flagellar hook-associated protein FlgL -
  P3T49_RS18030 flgK 3562287..3563810 (-) 1524 WP_010790079.1 flagellar hook-associated protein FlgK -
  P3T49_RS18035 - 3563827..3564309 (-) 483 WP_277713955.1 flagellar protein FlgN -
  P3T49_RS18040 flgM 3564325..3564585 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  P3T49_RS18045 - 3564665..3565084 (-) 420 WP_010790082.1 TIGR03826 family flagellar region protein -
  P3T49_RS18050 - 3565156..3565873 (-) 718 Protein_3523 amidophosphoribosyltransferase -
  P3T49_RS18055 - 3565837..3566133 (-) 297 WP_277713957.1 late competence development ComFB family protein -
  P3T49_RS18060 comFA 3566190..3567587 (-) 1398 WP_277713958.1 ATP-dependent helicase ComFA Machinery gene
  P3T49_RS18065 - 3567694..3568536 (-) 843 WP_277713959.1 DegV family protein -
  P3T49_RS18070 degU 3568643..3569332 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P3T49_RS18075 degS 3569409..3570572 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  P3T49_RS18080 - 3570790..3571443 (+) 654 WP_277713960.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53120.74 Da        Isoelectric Point: 10.0844

>NTDB_id=808391 P3T49_RS18060 WP_277713958.1 3566190..3567587(-) (comFA) [Bacillus atrophaeus strain NX-12]
MQTELKKKPLFSADLQQFLHQRHLLRTEIPFSEELINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKVSALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKYAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=808391 P3T49_RS18060 WP_277713958.1 3566190..3567587(-) (comFA) [Bacillus atrophaeus strain NX-12]
ATGCAGACTGAGTTGAAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCCGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGCGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGATGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCACATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACACCATCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGAAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGTGCACTCGTCCAAATCGCCGGAAGGACAGGGCGGCATAAAAA
ATATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-425)

Type III restriction enzyme, res subunit (ResIII)

(123-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.559

100

0.766