Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P3T49_RS12620 Genome accession   NZ_CP120723
Coordinates   2526060..2527790 (-) Length   576 a.a.
NCBI ID   WP_010789175.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2521060..2532790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS12600 - 2521198..2522316 (+) 1119 WP_106360551.1 NADH-dependent flavin oxidoreductase -
  P3T49_RS12605 - 2522481..2523338 (+) 858 WP_003325485.1 manganese catalase family protein -
  P3T49_RS12610 spo0A 2523506..2524303 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  P3T49_RS12615 spoIVB 2524585..2525865 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  P3T49_RS12620 recN 2526060..2527790 (-) 1731 WP_010789175.1 DNA repair protein RecN Machinery gene
  P3T49_RS12625 argR 2527825..2528274 (-) 450 WP_003325480.1 arginine repressor ArgR -
  P3T49_RS12630 - 2528373..2529218 (-) 846 WP_106271019.1 TlyA family RNA methyltransferase -
  P3T49_RS12635 dxs 2529215..2531116 (-) 1902 WP_003325478.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P3T49_RS12640 - 2531323..2532213 (-) 891 WP_199680820.1 polyprenyl synthetase family protein -
  P3T49_RS12645 - 2532203..2532457 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64463.21 Da        Isoelectric Point: 4.7139

>NTDB_id=808364 P3T49_RS12620 WP_010789175.1 2526060..2527790(-) (recN) [Bacillus atrophaeus strain NX-12]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSSGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDMVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=808364 P3T49_RS12620 WP_010789175.1 2526060..2527790(-) (recN) [Bacillus atrophaeus strain NX-12]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCAGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAACTCCAGCGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGCTGTTGGACAAGTTTGCCGGAGAAGAGGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGCTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCATCGGCTGGATTTAATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGCAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCTGACATCAATGAACCGCTGCAAAAACT
TTCAGAAAGTGTCTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACGGTA
GAAGACATTTTGGAATATGCTTCAAAAATTGAAGAAGAAATTGACCAAATCCAAAATAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATGGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTAGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGATGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCACCTTTTAATTGCGAAAGAATCAAAAGACGGAAGAACAACGACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCGGAAATCGGCCGGATGATTGCCGGGGTCGAGGTGACCGATCTGACCAAACGG
CATGCGAAAGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.278

100

0.903