Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P3T49_RS12610 Genome accession   NZ_CP120723
Coordinates   2523506..2524303 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518506..2529303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS12585 - 2518939..2519682 (-) 744 WP_003325489.1 glycerophosphodiester phosphodiesterase -
  P3T49_RS12590 - 2519794..2520417 (-) 624 WP_151290451.1 N-acetylmuramoyl-L-alanine amidase family protein -
  P3T49_RS12595 - 2520440..2520742 (-) 303 WP_003325487.1 hypothetical protein -
  P3T49_RS12600 - 2521198..2522316 (+) 1119 WP_106360551.1 NADH-dependent flavin oxidoreductase -
  P3T49_RS12605 - 2522481..2523338 (+) 858 WP_003325485.1 manganese catalase family protein -
  P3T49_RS12610 spo0A 2523506..2524303 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  P3T49_RS12615 spoIVB 2524585..2525865 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  P3T49_RS12620 recN 2526060..2527790 (-) 1731 WP_010789175.1 DNA repair protein RecN Machinery gene
  P3T49_RS12625 argR 2527825..2528274 (-) 450 WP_003325480.1 arginine repressor ArgR -
  P3T49_RS12630 - 2528373..2529218 (-) 846 WP_106271019.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=808363 P3T49_RS12610 WP_010789174.1 2523506..2524303(-) (spo0A) [Bacillus atrophaeus strain NX-12]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=808363 P3T49_RS12610 WP_010789174.1 2523506..2524303(-) (spo0A) [Bacillus atrophaeus strain NX-12]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGCCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGGGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGTATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTATACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974