Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   TSUB_RS02415 Genome accession   NZ_AP023054
Coordinates   502607..503221 (-) Length   204 a.a.
NCBI ID   WP_087016542.1    Uniprot ID   -
Organism   Thaumasiovibrio subtropicus strain C4V358     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 497607..508221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSUB_RS02400 - 498734..499744 (+) 1011 WP_087016548.1 Fe(3+) ABC transporter substrate-binding protein -
  TSUB_RS02405 - 499800..501425 (+) 1626 WP_087016546.1 ABC transporter permease -
  TSUB_RS02410 - 501422..502453 (+) 1032 WP_087016544.1 ABC transporter ATP-binding protein -
  TSUB_RS02415 opaR 502607..503221 (-) 615 WP_087016542.1 TetR/AcrR family transcriptional regulator Regulator
  TSUB_RS02420 hpt 503447..503980 (+) 534 WP_087026381.1 hypoxanthine phosphoribosyltransferase -
  TSUB_RS02425 can 504079..504726 (-) 648 WP_087026378.1 carbonate dehydratase -
  TSUB_RS02430 - 504824..505750 (+) 927 WP_087026375.1 ABC transporter ATP-binding protein -
  TSUB_RS02435 - 505747..506517 (+) 771 WP_087026372.1 ABC transporter permease -
  TSUB_RS02440 srmB 506566..507792 (-) 1227 WP_087026370.1 ATP-dependent RNA helicase SrmB -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23426.70 Da        Isoelectric Point: 5.1567

>NTDB_id=80834 TSUB_RS02415 WP_087016542.1 502607..503221(-) (opaR) [Thaumasiovibrio subtropicus strain C4V358]
METLIKKTRTRLSPEKRKQQLLDYALEVFARRGIGRAGHADIADMANVSVATVFNYFPTREELVEQVLAQVEQKFDDILT
QCLSLADQSLRGSMECLTHRLVDAVLEEKEWLKVWFEWSTSVRDEVWPRYIASNNRTMERMTEAFKPAAAQLNLNNVEDT
ARLLHGVCYVLYLQANLTKDREALQAQANSYLDILCPAQAEKSE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=80834 TSUB_RS02415 WP_087016542.1 502607..503221(-) (opaR) [Thaumasiovibrio subtropicus strain C4V358]
ATGGAAACTTTAATTAAAAAAACACGTACTCGGCTATCGCCCGAGAAAAGAAAACAGCAATTGTTGGATTACGCTTTGGA
AGTATTTGCTCGCCGAGGTATTGGTCGTGCTGGTCACGCGGATATCGCCGACATGGCAAATGTCTCCGTTGCAACCGTGT
TCAACTATTTTCCAACGCGGGAAGAGTTGGTAGAGCAAGTCCTTGCTCAAGTTGAACAAAAATTCGATGACATCCTCACT
CAGTGCCTTTCGCTAGCGGACCAATCACTACGCGGTAGCATGGAATGCTTAACGCATCGTTTAGTCGATGCTGTCCTTGA
AGAGAAAGAGTGGCTGAAAGTCTGGTTTGAATGGAGCACATCTGTTCGCGATGAAGTATGGCCTCGTTACATCGCTAGCA
ACAATCGCACGATGGAACGCATGACCGAAGCCTTCAAACCTGCAGCGGCACAGTTGAACCTCAACAACGTCGAGGACACC
GCACGCTTGCTACATGGTGTGTGTTATGTGCTTTACCTTCAAGCGAACCTAACAAAAGATCGTGAGGCGCTACAGGCTCA
AGCAAACAGCTATCTCGATATTCTTTGTCCAGCGCAAGCAGAAAAATCAGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

49

98.039

0.48
  hapR Vibrio cholerae C6706

47.423

95.098

0.451
  hapR Vibrio cholerae strain A1552

47.423

95.098

0.451

Multiple sequence alignment