Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   P6988_RS17005 Genome accession   NZ_CP120720
Coordinates   141889..143946 (-) Length   685 a.a.
NCBI ID   WP_277685488.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 136889..148946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS16990 (P6988_16990) clcA 137963..139363 (+) 1401 WP_038157729.1 H(+)/Cl(-) exchange transporter ClcA -
  P6988_RS16995 (P6988_16995) - 139482..140456 (+) 975 WP_006960883.1 TDT family transporter -
  P6988_RS17000 (P6988_17000) cqsA 140673..141854 (+) 1182 WP_040121570.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  P6988_RS17005 (P6988_17005) cqsS 141889..143946 (-) 2058 WP_277685488.1 hybrid sensor histidine kinase/response regulator Regulator
  P6988_RS17010 (P6988_17010) - 144066..147107 (-) 3042 WP_277685489.1 AAA family ATPase -
  P6988_RS17015 (P6988_17015) - 147117..148247 (-) 1131 WP_277685490.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78678.10 Da        Isoelectric Point: 5.2278

>NTDB_id=808321 P6988_RS17005 WP_277685488.1 141889..143946(-) (cqsS) [Vibrio coralliilyticus strain Rb102]
MTAVLESVRKVYQYAEPNLTLVGWMGLLGFPTYYYVWSYLFPQPYESLTLRLFCSFLFAIIAFRHALPKHIQRFMPQYYL
ISIAICLPYFFSYMMFMNEWSTIWAMSFMASVFLHVLLVHQTRIMLLQAAISLLLAFITVYGFNFSLAMEKIVWPYLPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASFDVLSSLLPDEKSKTAEFYSMSHQELTIAREVLS
DADEVIQNGNETIDLLLTSIDENRVSTSTFRKHSLKRVTEDSLSSFAYKSAKDKQAVQFKCEQDAEVFGSDTLIKYALYN
LLKNAFYYQNGNHFEITVEIKCSDKNSTIVFRDNGVGIAPEVLENIFKDFYTFGKSGSYGLGLPFCRKVMQALGGRISCR
SELNEWTEFTLTFPHYHSARVDYIKLDLMKSKSALYVGETSVIARLLNEQSFYKGFTLNNVDLELANSREEYEFEYDLIF
IDLDAVITSPDQLAALENKLHFTEARIVFLYDENNRYHNDIERHLTIYPVEKHRMSLEPGRVLDELFFESPEPDRNLLPR
KEVRVGKTIVIADDNHSLRTYTSILLEQQGFEVIQAQNGQEVLDKLQNNLVDLVLMDIEMPQLNGLDAANAIRSSDSEYA
NIPILGHTGDSTSVAIDKIHQSGMNDYIIKPAGTEVLLDKISNWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=808321 P6988_RS17005 WP_277685488.1 141889..143946(-) (cqsS) [Vibrio coralliilyticus strain Rb102]
ATGACAGCAGTTCTGGAATCAGTTCGCAAAGTATACCAGTATGCAGAACCAAACCTCACGCTCGTAGGTTGGATGGGGTT
GCTTGGCTTTCCAACTTACTACTACGTCTGGTCCTACTTATTCCCTCAGCCATACGAAAGCCTGACGCTCAGGCTCTTCT
GTTCATTCCTATTCGCAATAATTGCTTTTCGGCATGCGCTCCCTAAACACATACAGCGTTTTATGCCGCAATATTATCTC
ATCTCGATAGCGATCTGCCTGCCGTACTTCTTTAGCTATATGATGTTTATGAACGAATGGTCGACGATATGGGCGATGTC
GTTTATGGCTTCAGTTTTTCTCCATGTTCTGCTTGTTCATCAAACACGAATTATGCTTCTGCAAGCCGCGATTTCGTTGT
TGTTAGCTTTTATTACCGTCTACGGATTTAACTTTAGTTTGGCCATGGAGAAGATTGTGTGGCCATATTTGCCGATTTTT
CTCTTCACATATGTGTTTGGGAACCTGTTTTACTTCCGTAATCAGGTTGAACATGAGAGTAAAGTGTCTATAGCTAAGTC
CTTTGGCGCAGGAATCGCTCATGAAATGCGTAACCCGCTAAGTGCACTGAAAGCATCGTTTGACGTGCTAAGCTCCTTGT
TACCTGATGAAAAGTCCAAAACTGCTGAATTTTACTCAATGTCCCATCAGGAATTAACCATTGCGAGAGAAGTACTCAGT
GATGCGGATGAAGTCATTCAGAATGGTAATGAAACCATTGATCTTCTGTTAACTTCTATTGATGAAAACCGTGTATCAAC
GTCGACATTCAGAAAGCATTCTTTGAAACGTGTGACGGAAGATTCTCTATCCAGCTTTGCTTACAAAAGCGCAAAGGACA
AACAGGCTGTTCAGTTTAAATGTGAACAGGATGCCGAAGTGTTTGGTAGTGATACGCTCATCAAGTATGCCTTGTATAAC
CTTCTCAAAAATGCATTTTATTATCAGAATGGCAATCACTTCGAAATTACTGTTGAAATAAAGTGCTCCGATAAAAACAG
TACCATCGTATTTCGGGATAACGGCGTTGGTATCGCCCCTGAAGTGCTTGAAAACATTTTTAAAGATTTCTATACCTTCG
GTAAGTCAGGCAGCTATGGCCTCGGTTTACCATTTTGTCGAAAAGTGATGCAAGCTTTAGGTGGTAGAATCAGCTGTCGG
TCTGAGTTGAATGAATGGACTGAATTCACGCTGACGTTCCCTCATTATCATTCTGCGAGAGTCGATTATATAAAACTGGA
TCTAATGAAATCTAAATCAGCCCTTTATGTTGGGGAAACAAGTGTTATTGCACGGCTCCTCAATGAACAGTCTTTCTACA
AAGGCTTTACCCTTAACAACGTTGACCTCGAGCTGGCAAACAGTAGGGAAGAATACGAATTTGAATACGACTTGATATTC
ATCGATTTAGATGCAGTGATAACCTCACCTGATCAACTAGCAGCATTAGAGAATAAGCTTCACTTTACTGAAGCGAGAAT
CGTGTTTCTCTACGATGAGAACAACCGCTATCACAACGATATAGAAAGGCACCTCACCATTTACCCTGTTGAGAAGCATC
GAATGTCGCTAGAGCCAGGGCGTGTTTTGGACGAATTGTTCTTTGAGTCTCCTGAGCCTGACCGAAACTTACTCCCAAGA
AAAGAAGTCCGTGTGGGCAAAACGATTGTCATTGCAGACGATAATCATTCACTCCGTACTTACACATCGATACTTTTAGA
ACAGCAGGGGTTTGAGGTGATTCAAGCTCAGAACGGGCAAGAAGTGTTAGATAAACTGCAAAACAACCTTGTCGATTTAG
TGCTAATGGATATTGAGATGCCACAACTGAATGGCCTTGATGCAGCTAATGCTATTCGTTCATCAGATAGTGAGTACGCC
AATATTCCGATTTTAGGCCACACTGGAGACTCTACATCTGTTGCTATCGATAAGATTCATCAGTCAGGGATGAATGATTA
TATTATTAAGCCTGCCGGTACAGAAGTACTGCTGGATAAAATATCGAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(569-681)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.256

100

0.524