Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   P6988_RS17000 Genome accession   NZ_CP120720
Coordinates   140673..141854 (+) Length   393 a.a.
NCBI ID   WP_040121570.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 135673..146854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS16985 (P6988_16985) - 136578..137555 (+) 978 WP_019275095.1 CobW family GTP-binding protein -
  P6988_RS16990 (P6988_16990) clcA 137963..139363 (+) 1401 WP_038157729.1 H(+)/Cl(-) exchange transporter ClcA -
  P6988_RS16995 (P6988_16995) - 139482..140456 (+) 975 WP_006960883.1 TDT family transporter -
  P6988_RS17000 (P6988_17000) cqsA 140673..141854 (+) 1182 WP_040121570.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  P6988_RS17005 (P6988_17005) cqsS 141889..143946 (-) 2058 WP_277685488.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44070.31 Da        Isoelectric Point: 6.6120

>NTDB_id=808320 P6988_RS17000 WP_040121570.1 140673..141854(+) (cqsA) [Vibrio coralliilyticus strain Rb102]
MNTLNHYPPLPDFINKKINFYLDDLINTNKNGKHLVLGKRPQSGDLVLQSNDYLDLSNNPDIIDHHISSIMARKNSPFMS
GIFLQDESSKPEVEEKLAKYVGFQSCLLSQSGWAANTALLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNVK
HLNKLINRHGPGIVLVDSVYSTIGTIAPLVELVLLAKEYGCAILVDESHSLGTHGKHGAGLLQSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNRANDCVPFVAYPAIFSSTMLPHELDRLDKTLDIIKEQDKERAYLQELSEYLKNNLANIGLTIRSQSQ
IIAVETGDERNTEKVRDFFESQGIFGAVFCRPATTPNKNIIRFSLNSSTTKEEVNKIIRACQMAYELPDMYFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=808320 P6988_RS17000 WP_040121570.1 140673..141854(+) (cqsA) [Vibrio coralliilyticus strain Rb102]
ATGAATACGCTTAACCATTACCCTCCTTTGCCAGATTTTATTAATAAAAAAATAAATTTCTATCTGGATGACTTAATTAA
TACCAATAAGAACGGTAAGCATTTAGTTCTTGGAAAAAGGCCGCAAAGTGGCGACCTCGTTTTGCAAAGTAATGATTACC
TCGATTTATCCAATAACCCCGATATCATTGATCACCATATTAGTTCTATTATGGCACGTAAAAATAGCCCATTTATGTCA
GGTATATTTTTGCAGGATGAAAGTTCCAAGCCTGAAGTGGAAGAAAAACTCGCCAAGTATGTAGGGTTTCAATCTTGCTT
ACTTTCTCAATCTGGTTGGGCGGCAAATACAGCCTTACTGCAAACCATTTGTGACAGCGAAACAAATGTCTACATCGACT
TTTTTGCTCATATGTCTTTATGGGAAGGTGCGCGTATCGCCGGAGCGAACATCCATCCCTTTATGCATAATAACGTCAAG
CATTTGAATAAATTGATAAATAGACACGGCCCTGGAATCGTTCTTGTCGATTCAGTTTACAGTACCATAGGCACCATTGC
CCCCTTAGTAGAGCTGGTGTTACTCGCGAAGGAATATGGCTGTGCGATATTAGTTGATGAATCCCACTCCCTAGGTACTC
ACGGTAAACATGGCGCTGGTTTGTTACAAAGCTTAAAATTAAGTCATCAAGTCGACTTTATGACCGCCAGTTTAGCAAAA
ACGTTTGCCTATCGAGCTGGTGCTATTTGGTGTAACAATCGCGCTAATGATTGTGTACCATTTGTGGCTTACCCCGCGAT
ATTTAGCTCTACGATGTTACCACATGAGTTGGATAGGCTCGATAAGACACTGGATATAATAAAAGAACAAGATAAAGAAA
GAGCTTACTTACAGGAGTTAAGCGAGTATTTAAAAAACAACCTTGCAAATATCGGGCTAACTATTCGAAGTCAATCGCAA
ATAATAGCGGTTGAAACGGGAGATGAACGTAACACCGAAAAAGTGAGAGACTTTTTTGAATCACAAGGCATATTTGGTGC
GGTATTTTGTCGACCCGCAACGACACCTAATAAAAACATAATACGTTTTTCACTTAATAGCTCTACCACTAAAGAAGAAG
TAAATAAAATCATTCGCGCTTGTCAGATGGCTTACGAACTTCCAGATATGTATTTTATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

62.857

97.964

0.616