Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   P6988_RS07670 Genome accession   NZ_CP120719
Coordinates   1611048..1612442 (+) Length   464 a.a.
NCBI ID   WP_019275536.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606048..1617442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS07655 (P6988_07655) - 1606732..1607961 (-) 1230 WP_277684881.1 integrase domain-containing protein -
  P6988_RS07665 (P6988_07665) uvrB 1608754..1610784 (+) 2031 WP_006963019.1 excinuclease ABC subunit UvrB -
  P6988_RS07670 (P6988_07670) luxO 1611048..1612442 (+) 1395 WP_019275536.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  P6988_RS07675 (P6988_07675) luxU 1612446..1612790 (+) 345 WP_029236080.1 quorum-sensing phosphorelay protein LuxU -
  P6988_RS07680 (P6988_07680) - 1612776..1613663 (-) 888 WP_277684882.1 YvcK family protein -
  P6988_RS07685 (P6988_07685) moaA 1613969..1614958 (+) 990 WP_171346949.1 GTP 3',8-cyclase MoaA -
  P6988_RS07690 (P6988_07690) moaB 1615048..1615560 (+) 513 WP_006963014.1 molybdenum cofactor biosynthesis protein B -
  P6988_RS07695 (P6988_07695) moaC 1615573..1616052 (+) 480 WP_277684883.1 cyclic pyranopterin monophosphate synthase MoaC -
  P6988_RS07700 (P6988_07700) moaD 1616049..1616294 (+) 246 WP_095571788.1 molybdopterin synthase sulfur carrier subunit -
  P6988_RS07705 (P6988_07705) moaE 1616294..1616749 (+) 456 WP_277684884.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51738.07 Da        Isoelectric Point: 5.8826

>NTDB_id=808308 P6988_RS07670 WP_019275536.1 1611048..1612442(+) (luxO) [Vibrio coralliilyticus strain Rb102]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTLYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=808308 P6988_RS07670 WP_019275536.1 1611048..1612442(+) (luxO) [Vibrio coralliilyticus strain Rb102]
ATGCAACATAATACGCAAACACAAAAGTCCAAATATCTTTTGATGGTTGAAGACACTGCGTCGGTCGCGGCGTTGTACCG
TTCTTATCTCACCCCTCTGGGTATCGATATCAATATTGTTGGTACCGGGCGCGATGCCATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATCCTATTGGACCTTCGTCTTCCCGACATGACAGGTATGGATGTTTTGCATGCAGTGAAACAGAAAATG
CCTGATGTTCCAGTGATCTTCATGACGGCCCATGGCTCGATTGATACCGCTGTAGAAGCGATGCGTCATGGTGCTCAGGA
TTTCCTTATCAAGCCGTGTGAAGCGGACCGACTCCGTGTCACGGTTAACAACGCTATTCGCAAAGCGACCAAGTTGAAAA
ATGAAGCTGATAATCCGGGTAACCAGAATTATCAAGGCTTTATCGGTAGTAGCCACACTATGCAGGCTGTGTATCGTACC
ATCGACTCCGCCGCATCCAGTAAAGCCAGTATTTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAGGC
CATTCATGCGGCAAGTAAGCGTGGTGACAAGCCCTTCATCGCGATCAACTGTGCGGCTATTCCAAAAGATCTGATTGAAA
GTGAATTGTTTGGTCACGTGAAAGGCGCGTTTACTGGCGCAGCCACTGATCGACAAGGCGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAACTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGCTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGTTCTTCGAAAATGAAAAGCGTCGACGTGCGTTTCGTCTGTGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGTCGCTTCCGTGAAGACTTATATTATCGTTTATACGTAATTCCTTTGCACCTACCTCCTTTGAGGGAG
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGACT
GGCACCAGAAGTCGTAAGCCGCTTCGCTCAATACGAGTGGCCGGGTAATGTCCGTCAATTGCAAAACGTACTGAGAAACG
TCGTGGTTCTTAACAACGGTGAAAACATCTCCATGGATATGTTGCCGCCTCCATTGAATCAGCCGGTCGAAAATCAGATC
AGGGTAGACTTGCAGGACAAAGACAGTTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATTGA
GCAAGCGATTCAGGCCTGTGAAGGGAATATTCCTAAAGCCGCGGGCTATTTAGACGTCAGTCCATCAACGCTTTATCGCA
AGCTGCAAAACTGGAACACGAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.946

96.552

0.849
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369