Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   P6988_RS05300 Genome accession   NZ_CP120719
Coordinates   1096470..1097075 (-) Length   201 a.a.
NCBI ID   WP_006958122.1    Uniprot ID   A0A2A2CS00
Organism   Vibrio coralliilyticus strain Rb102     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091470..1102075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS05290 (P6988_05290) aceF 1092765..1094666 (+) 1902 WP_171339887.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  P6988_RS05295 (P6988_05295) lpdA 1094922..1096352 (+) 1431 WP_006958123.1 dihydrolipoyl dehydrogenase -
  P6988_RS05300 (P6988_05300) opaR 1096470..1097075 (-) 606 WP_006958122.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  P6988_RS05305 (P6988_05305) hpt 1097382..1097912 (+) 531 WP_065741177.1 hypoxanthine phosphoribosyltransferase -
  P6988_RS05310 (P6988_05310) can 1097970..1098629 (-) 660 WP_006958120.1 carbonate dehydratase -
  P6988_RS05315 (P6988_05315) - 1098984..1100654 (+) 1671 WP_277684728.1 SulP family inorganic anion transporter -
  P6988_RS05320 (P6988_05320) - 1100855..1101769 (+) 915 WP_021457059.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23243.41 Da        Isoelectric Point: 5.2990

>NTDB_id=808306 P6988_RS05300 WP_006958122.1 1096470..1097075(-) (opaR) [Vibrio coralliilyticus strain Rb102]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDDHDPA
DLATLFHGICYSLFVQANRTQDDESVNRLTQSYLDMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=808306 P6988_RS05300 WP_006958122.1 1096470..1097075(-) (opaR) [Vibrio coralliilyticus strain Rb102]
ATGGATTCTATAGCTAAGAGACCGCGTACGCGTCTTTCACCACAAAAACGTAAACAACAACTGATGGAAATCGCATTAGA
GGTGTTTGCTCGTCGTGGTATTGGTCGCGGTGGTCATGCTGACATTGCAGAAATCGCTCAGGTTTCTGTTGCTACTGTTT
TTAACTACTTCCCAACCCGCGAAGACTTGGTTGATGATGTACTTAACTACGTAGTTCGTCAGTTCTCAAACTTCCTATCA
GATAATATCGATCTTGATATTCATGCAAAAGAAAACCTACGCAACCTAACTTCGGCAATGGTTGACCTTGTTGTCAACGA
CTGCCACTGGCTTAAAGTTTGGTTCGAGTGGAGTGCATCGACACGTGATGAAGTATGGCCACTGTTTGTTACGACAAACC
GTACCAACCAGCTTCTAGTTCAGAACATGTTTATCAAAGCAATCGAGCGCGGTGAAGTATGTGATGATCACGACCCAGCA
GACCTAGCGACACTATTCCACGGCATCTGCTACTCACTGTTTGTGCAGGCTAACCGTACTCAAGATGATGAGTCTGTAAA
CCGCCTGACACAAAGCTACCTAGATATGCTTTGCATCTACAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2CS00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

85

99.502

0.846
  hapR Vibrio cholerae C6706

76.382

99.005

0.756
  hapR Vibrio cholerae strain A1552

76.382

99.005

0.756