Detailed information NTG0808304

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P6988_RS05230
• Genome accession: NZ_CP120719
• Coordinates: 1078233..1079102 (-)
• Length: 289 a.a.
• NCBI ID: WP_064488045.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus strain Rb102
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1073233..1084102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6988_RS05195 (P6988_05195)	rpsP	1074365..1074613 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
P6988_RS05200 (P6988_05200)	rimM	1074643..1075191 (+)	549	WP_029236289.1	ribosome maturation factor RimM	-
P6988_RS05205 (P6988_05205)	trmD	1075219..1075962 (+)	744	WP_006958144.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
P6988_RS05210 (P6988_05210)	rplS	1076004..1076357 (+)	354	WP_006958143.1	50S ribosomal protein L19	-
P6988_RS05215 (P6988_05215)	yacG	1076603..1076797 (-)	195	WP_277684722.1	DNA gyrase inhibitor YacG	-
P6988_RS05220 (P6988_05220)	zapD	1076849..1077589 (-)	741	WP_006958141.1	cell division protein ZapD	-
P6988_RS05225 (P6988_05225)	coaE	1077623..1078231 (-)	609	WP_043009232.1	dephospho-CoA kinase	-
P6988_RS05230 (P6988_05230)	pilD	1078233..1079102 (-)	870	WP_064488045.1	prepilin peptidase	Machinery gene
P6988_RS05235 (P6988_05235)	-	1079152..1080366 (-)	1215	WP_277684723.1	type II secretion system F family protein	-
P6988_RS05240 (P6988_05240)	pilB	1080375..1082021 (-)	1647	WP_277684724.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P6988_RS05245 (P6988_05245)	-	1082024..1082464 (-)	441	WP_171347462.1	pilin	-
P6988_RS05250 (P6988_05250)	nadC	1082692..1083579 (-)	888	WP_038163308.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.51 Da
• Isoelectric Point: 6.6830

>NTDB_id=808304 P6988_RS05230 WP_064488045.1 1078233..1079102(-) (pilD) [Vibrio coralliilyticus strain Rb102]
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMEREWRHECAESFPEYGIAPPHGTYNLSIPRSTCPSCKTQIRNL
DNIPVISWLLLRGKCRACQAKISPRYPLVELLSGAMSFAIAYQFELSAFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWFVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGI

Nucleotide

• Length: 870 bp

>NTDB_id=808304 P6988_RS05230 WP_064488045.1 1078233..1079102(-) (pilD) [Vibrio coralliilyticus strain Rb102]
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTAATCCACCGTTTACCACAAATGATGGAGCGAGAGTGGCGACACGAGTGTGCTGAAAGCTTCCCAGAATACGGTA
TCGCTCCTCCACACGGTACCTATAACCTCAGTATTCCTCGCTCCACCTGCCCAAGCTGTAAAACGCAAATCCGTAATCTC
GACAATATCCCGGTTATTAGCTGGCTACTTTTGCGTGGTAAATGTCGTGCCTGTCAGGCCAAAATTAGCCCTCGCTATCC
GTTGGTTGAGTTGCTGTCAGGTGCAATGAGCTTTGCTATTGCTTATCAGTTTGAACTGAGCGCTTTTGCCATCGCCCTGC
TATTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTAATTTGGTCAGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTTTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
GGGTTATTTATGTTTATGGTTTGTCTACTGGGGCTTCAAGTTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTAGGCCTA
GTCTTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCTTTTCCATTCGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGATCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	75.779	100	0.758
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	51.661	93.772	0.484
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474