Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P6988_RS00740 Genome accession   NZ_CP120719
Coordinates   156395..157441 (-) Length   348 a.a.
NCBI ID   WP_031343405.1    Uniprot ID   A0A097QPW4
Organism   Vibrio coralliilyticus strain Rb102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 151395..162441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS00720 (P6988_00720) csrA 151453..151650 (-) 198 WP_006963114.1 carbon storage regulator CsrA -
  P6988_RS00725 (P6988_00725) - 151743..152930 (-) 1188 WP_277684420.1 aspartate kinase -
  P6988_RS00730 (P6988_00730) alaS 153125..155707 (-) 2583 WP_277684421.1 alanine--tRNA ligase -
  P6988_RS00735 (P6988_00735) recX 155849..156313 (-) 465 WP_171750409.1 recombination regulator RecX -
  P6988_RS00740 (P6988_00740) recA 156395..157441 (-) 1047 WP_031343405.1 recombinase RecA Machinery gene
  P6988_RS00745 (P6988_00745) pncC 157622..158125 (-) 504 WP_277684422.1 nicotinamide-nucleotide amidase -
  P6988_RS00750 (P6988_00750) mutS 158210..160774 (+) 2565 WP_277684423.1 DNA mismatch repair protein MutS -
  P6988_RS00755 (P6988_00755) lptG 160827..161897 (-) 1071 WP_006963120.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37454.91 Da        Isoelectric Point: 4.8016

>NTDB_id=808286 P6988_RS00740 WP_031343405.1 156395..157441(-) (recA) [Vibrio coralliilyticus strain Rb102]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGAGFNREGELIDLGVKNKLVEKAGAWYSYNGDKIGQGKANACKYLRENPAAAQQIDT
KLRELLLTPAEIQPDDAELGEMPEQEEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=808286 P6988_RS00740 WP_031343405.1 156395..157441(-) (recA) [Vibrio coralliilyticus strain Rb102]
ATGGACGATAACAAACAGAAAGCGCTCGCCGCTGCGCTCGGTCAGATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
TCTTGGTGATAACCGCGCTATGGATGTTGAAACCATCTCAACAGGTTCACTTTCTCTTGATATCGCATTGGGTGCTGGTG
GTCTGCCAATGGGTCGTATCGTTGAAGTTTATGGCCCTGAGTCATCAGGTAAGACGACGCTAACTCTTGAGCTGATTGCT
GCAGCGCAACGTGAAGGTAAAACATGTGCCTTTATTGATGCAGAACACGCTCTTGATCCTGTCTACGCTAAGAAGCTAGG
TGTAGATATTGATGCACTGTTGGTTTCTCAGCCAGACACGGGTGAGCAAGCGTTAGAAATCTGTGACGCTCTGGCGCGTT
CTGGCGCGATTGACGTCATGGTTGTCGACTCTGTGGCTGCATTGACACCGAAAGCGGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAGGCGCGTATGCTTTCTCAAGCAATGCGTAAGCTGACAGGTAACCTGAAGCAGTCAAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCTGAAACGACCACAGGTGGTAATGCAC
TAAAATTCTACGCTTCTGTTCGTCTTGATATCCGCCGCACAGGCTCTATCAAGGAAGGTGACGAAGTGGTGGGTAACGAA
ACTCGCATTAAAGTGGTTAAGAACAAGATCGCAGCACCGTTTAAACAAGCAGAAACGCAAATCATGTACGGCGCGGGCTT
TAACCGTGAAGGTGAGCTGATTGACCTAGGTGTGAAGAATAAGCTGGTTGAAAAAGCGGGCGCTTGGTATAGCTACAATG
GCGATAAGATTGGCCAAGGTAAAGCAAATGCATGCAAGTACCTACGTGAAAACCCAGCAGCAGCTCAGCAAATCGATACG
AAACTGCGTGAGTTGTTGCTAACACCAGCAGAAATCCAGCCAGACGATGCTGAGCTAGGTGAAATGCCAGAGCAAGAAGA
GCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QPW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.385

100

0.897
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.385

100

0.897
  recA Pseudomonas stutzeri DSM 10701

74.924

95.115

0.713
  recA Acinetobacter baumannii D1279779

72.141

97.989

0.707
  recA Acinetobacter baylyi ADP1

73.874

95.69

0.707
  recA Neisseria gonorrhoeae MS11

67.241

100

0.672
  recA Neisseria gonorrhoeae MS11

67.241

100

0.672
  recA Neisseria gonorrhoeae strain FA1090

67.241

100

0.672
  recA Glaesserella parasuis strain SC1401

66.193

100

0.67
  recA Ralstonia pseudosolanacearum GMI1000

71.111

90.517

0.644
  recA Helicobacter pylori 26695

60.756

98.851

0.601
  recA Helicobacter pylori strain NCTC11637

60.465

98.851

0.598
  recA Streptococcus pneumoniae TIGR4

58.857

100

0.592
  recA Streptococcus pneumoniae Rx1

58.857

100

0.592
  recA Streptococcus pneumoniae D39

58.857

100

0.592
  recA Streptococcus pneumoniae R6

58.857

100

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

91.667

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Streptococcus pyogenes NZ131

61.231

93.391

0.572
  recA Streptococcus mitis SK321

61.3

92.816

0.569
  recA Streptococcus mitis NCTC 12261

61.3

92.816

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.115

0.566
  recA Streptococcus mutans UA159

60.615

93.391

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.442

91.667

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

92.241

0.555
  recA Lactococcus lactis subsp. cremoris KW2

59.752

92.816

0.555