Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RKE30_RS37555 Genome accession   NZ_CP134875
Coordinates   8580404..8581081 (+) Length   225 a.a.
NCBI ID   WP_313748773.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8575404..8586081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS37530 (RKE30_37530) - 8575848..8576123 (-) 276 WP_313748768.1 DUF1876 domain-containing protein -
  RKE30_RS37535 (RKE30_37535) - 8576214..8577059 (-) 846 WP_313748769.1 DMT family transporter -
  RKE30_RS37540 (RKE30_37540) - 8577056..8577610 (-) 555 WP_313748770.1 YbaK/EbsC family protein -
  RKE30_RS37545 (RKE30_37545) - 8577621..8579114 (-) 1494 WP_313748771.1 nitrilase-related carbon-nitrogen hydrolase -
  RKE30_RS37550 (RKE30_37550) - 8579250..8580407 (+) 1158 WP_313748772.1 sensor histidine kinase -
  RKE30_RS37555 (RKE30_37555) vraR 8580404..8581081 (+) 678 WP_313748773.1 response regulator transcription factor Regulator
  RKE30_RS41765 - 8581261..8581689 (+) 429 WP_399134785.1 hypothetical protein -
  RKE30_RS37565 (RKE30_37565) - 8581641..8582402 (-) 762 WP_313748774.1 hypothetical protein -
  RKE30_RS37570 (RKE30_37570) - 8582475..8582660 (-) 186 WP_313748775.1 DUF397 domain-containing protein -
  RKE30_RS37575 (RKE30_37575) - 8582657..8583502 (-) 846 WP_313748776.1 helix-turn-helix transcriptional regulator -
  RKE30_RS37580 (RKE30_37580) - 8583642..8584121 (+) 480 WP_313748777.1 ATP-binding protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23988.74 Da        Isoelectric Point: 6.4967

>NTDB_id=808271 RKE30_RS37555 WP_313748773.1 8580404..8581081(+) (vraR) [Streptomyces sp. Li-HN-5-11]
MTVRVLVVDDQEMVRTALRLVIDRREGLTVVGEAADGDQAVARAVELRPDVVLMDVRMPGTTGVEATGRIVREWPGPGPA
PHVLVLTTFDLDEYVHAALRAGAAGFLLKNSAPDHLAEAIRATAAGEPVLAPTVTRRLIDTVNALPTALLPTVPPRDQPA
LTDLLTDRELQVLVLVARGLSNAQIASALDLSEANVKSRVNRILTRLGLGNRVQAALLAHQAGLR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=808271 RKE30_RS37555 WP_313748773.1 8580404..8581081(+) (vraR) [Streptomyces sp. Li-HN-5-11]
ATGACCGTACGCGTACTGGTCGTGGACGACCAGGAAATGGTCCGGACCGCACTGCGTCTGGTCATCGACCGCCGGGAGGG
CCTGACGGTGGTGGGCGAGGCGGCGGACGGGGACCAAGCGGTGGCCCGGGCGGTGGAACTCCGTCCGGACGTGGTGTTGA
TGGACGTCCGTATGCCCGGCACGACGGGCGTCGAGGCGACCGGGCGCATCGTCCGGGAGTGGCCCGGTCCGGGACCGGCA
CCGCACGTCCTGGTCCTGACGACGTTCGACCTGGACGAGTACGTCCACGCCGCCCTCCGCGCCGGCGCCGCCGGCTTCCT
GCTGAAGAACAGCGCCCCCGACCACCTGGCCGAGGCCATCCGGGCCACGGCGGCGGGAGAACCGGTCCTGGCCCCGACGG
TCACCCGCCGCCTCATCGACACGGTCAACGCCCTGCCGACGGCCCTGTTGCCGACGGTTCCCCCACGGGATCAGCCCGCC
CTGACCGACCTGCTGACCGACCGCGAACTCCAGGTCCTCGTCCTGGTCGCCCGGGGCCTGTCCAACGCGCAGATAGCTTC
GGCCCTGGACCTGTCCGAGGCGAACGTGAAGAGCCGCGTGAACAGGATCCTCACGCGGCTCGGTTTGGGGAACAGGGTCC
AGGCGGCGCTGCTGGCGCATCAGGCGGGGCTGCGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(164-219)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.393

99.556

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

36.726

100

0.369