Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RKE30_RS29710 Genome accession   NZ_CP134875
Coordinates   6828379..6829020 (-) Length   213 a.a.
NCBI ID   WP_313747372.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6823379..6834020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS29680 (RKE30_29680) - 6823904..6824410 (+) 507 WP_313747366.1 HNH endonuclease -
  RKE30_RS29685 (RKE30_29685) - 6824484..6825437 (-) 954 WP_313747367.1 SPFH domain-containing protein -
  RKE30_RS29690 (RKE30_29690) - 6825594..6826025 (-) 432 WP_313747368.1 NfeD family protein -
  RKE30_RS29695 (RKE30_29695) - 6826146..6826943 (-) 798 WP_313747369.1 ABC transporter ATP-binding protein -
  RKE30_RS29700 (RKE30_29700) - 6827097..6827885 (+) 789 WP_313747370.1 hypothetical protein -
  RKE30_RS29705 (RKE30_29705) - 6827956..6828201 (-) 246 WP_313747371.1 chaplin -
  RKE30_RS29710 (RKE30_29710) vraR 6828379..6829020 (-) 642 WP_313747372.1 response regulator transcription factor Regulator
  RKE30_RS29715 (RKE30_29715) - 6829013..6830158 (-) 1146 WP_313747373.1 GAF domain-containing sensor histidine kinase -
  RKE30_RS29720 (RKE30_29720) - 6830431..6831129 (+) 699 WP_313747374.1 SDR family NAD(P)-dependent oxidoreductase -
  RKE30_RS29725 (RKE30_29725) - 6831126..6832208 (+) 1083 WP_313747375.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  RKE30_RS29730 (RKE30_29730) - 6832511..6833263 (+) 753 WP_313747376.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23047.36 Da        Isoelectric Point: 5.3665

>NTDB_id=808255 RKE30_RS29710 WP_313747372.1 6828379..6829020(-) (vraR) [Streptomyces sp. Li-HN-5-11]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELKPDVVLMDVKMPVMDGVEALRRLRELDNHAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGQGRGPSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=808255 RKE30_RS29710 WP_313747372.1 6828379..6829020(-) (vraR) [Streptomyces sp. Li-HN-5-11]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTGGTCCGCCGGGGCCTGCGCACCTTCCTCGAGGTGCA
GGACGACATCGAGGTCGTGGGCGAGGCGGCGGACGGCGCCGAAGGAGTCGCCCGGGCCGAGGAACTCAAGCCGGACGTCG
TCCTCATGGACGTCAAGATGCCGGTCATGGACGGCGTCGAGGCGCTGCGCCGGCTCCGCGAACTCGACAACCACGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTGGTCCCGGCCCTGCGCGCGGGCGCCGCCGGGTACGTCTACAA
GGACGTGGACCCCGACGCGCTCGCCGGCGCGATCCGCTCGGTGCACGCGGGCCACATCCTGCTCCAACCGGAGGTGGCCG
GCGCGCTGTTGTCCCAGGAGGAGGCCAACTCCGGCCAGGGCAGAGGGCCTTCGCTCACGGAGCGGGAGCGGGAGGTGCTG
GGCCTGATAGCGGACGGCCGCTCGAACCGCGAGATCGCCCGGGCCCTGGTGCTCTCCGAGAAGACCGTCAAGACACATGT
GTCGAACATCCTGATGAAGCTCGACCTGGCGGACCGCACCCAGGCGGCGCTGTGGGCCGTACGCCATGGTGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.919

99.061

0.465
  degU Bacillus subtilis subsp. subtilis str. 168

40.271

100

0.418