Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RKE30_RS28130 Genome accession   NZ_CP134875
Coordinates   6501796..6503151 (-) Length   451 a.a.
NCBI ID   WP_313747105.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6496796..6508151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS28110 (RKE30_28110) alaS 6497177..6499849 (-) 2673 WP_313747101.1 alanine--tRNA ligase -
  RKE30_RS28115 (RKE30_28115) - 6499849..6500208 (-) 360 WP_313747102.1 hypothetical protein -
  RKE30_RS28120 (RKE30_28120) - 6500218..6500658 (-) 441 WP_313747103.1 DUF948 domain-containing protein -
  RKE30_RS28125 (RKE30_28125) rpsD 6500878..6501492 (-) 615 WP_313747104.1 30S ribosomal protein S4 -
  RKE30_RS28130 (RKE30_28130) rarA 6501796..6503151 (-) 1356 WP_313747105.1 replication-associated recombination protein A Machinery gene
  RKE30_RS28135 (RKE30_28135) - 6503232..6503888 (-) 657 WP_313747106.1 vitamin K epoxide reductase family protein -
  RKE30_RS28140 (RKE30_28140) - 6504033..6504893 (+) 861 WP_313747107.1 ABC transporter ATP-binding protein -
  RKE30_RS28145 (RKE30_28145) - 6504890..6505735 (+) 846 WP_313747108.1 ABC transporter permease -
  RKE30_RS28150 (RKE30_28150) - 6505732..6506937 (+) 1206 WP_313747109.1 sensor histidine kinase -
  RKE30_RS28155 (RKE30_28155) vraR 6506934..6507560 (+) 627 WP_313747110.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48150.55 Da        Isoelectric Point: 6.5125

>NTDB_id=808250 RKE30_RS28130 WP_313747105.1 6501796..6503151(-) (rarA) [Streptomyces sp. Li-HN-5-11]
MEPDLFTAAAEERQEKDPAASPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRASGGYGQETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDIRGLLRRALTDARGLKDTVALPEDTESHLLRIAGGDARRALTALEAAAGAALDKGETE
IGLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNSATTAIGAALDDVRKGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAAQQYAPDALKDREYYTPGRHGAEARYADAVEWTRKHLGRRRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=808250 RKE30_RS28130 WP_313747105.1 6501796..6503151(-) (rarA) [Streptomyces sp. Li-HN-5-11]
GTGGAGCCCGACCTGTTCACCGCCGCAGCAGAAGAACGCCAGGAGAAGGACCCGGCCGCAAGCCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGGCAGCAGCACCTGCTCAAGCCCGGCTCGCCGCTGCGGCGGCTGGTCGGCG
AGGGCGCGGGCGGACCGGCGGGACCGTCGTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGCAAGACCACCCTGGCCTAC
GTCGTCTCCAAGGCCACCAACAAGCGCTTCGTGGAGCTGTCGGCGATCACCGCGGGTGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCTCCGGCGGGTACGGCCAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CGCAGCAGGACTCCCTGCTCCCGGCGGTCGAGAACCGCTGGGTGACCCTCATCGCGGCCACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTGTCCCGCTCCCTGCTGCTCACCCTCGAACCCCTCACCGACGACGACATCCGCGGCCTGCT
GCGGCGCGCGCTCACCGACGCGCGGGGCCTGAAGGACACCGTCGCCCTCCCCGAGGACACCGAGAGCCACCTCCTGCGCA
TCGCCGGCGGCGACGCCCGCCGCGCCCTGACCGCCCTGGAGGCCGCGGCCGGGGCCGCGCTCGACAAGGGCGAGACGGAG
ATCGGCCTGACGACGCTCGAGGAGACCGTCGACCGGGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
CGCCAGCGCCCTGATCAAGTCCATCCGAGGCTCCGACGTGGACGCCGCGCTGCACTACCTGGCCCGGATGATCGAGGCCG
GCGAGGATCCCCGCTTCATCGCCCGCCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCCACCGCGCTG
CCCACGGCCGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGTTTCCCGGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTGGCCCCCAAGTCCAACTCCGCGACCACGGCGATCGGTGCCGCCCTGGACGACGTACGCAAGGGACTGG
CCGGACCGGTTCCCCCGCACCTGCGGGACGGGCACTACAAGGGCGCCGCCAAGCTCGGCCACGCGCAGGGGTACGTCTAC
CCGCACGACCTGCCCGAGGGCATCGCCGCCCAGCAGTACGCCCCGGACGCCCTCAAGGACCGCGAGTACTACACGCCGGG
CAGGCACGGCGCGGAGGCCCGGTACGCGGACGCGGTGGAGTGGACCCGCAAGCACCTGGGTCGAAGGCGGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.342

96.009

0.426