Detailed information NTG0808250

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P6910_RS17905
• Genome accession: NZ_CP120717
• Coordinates: 5214119..5214991 (+)
• Length: 290 a.a.
• NCBI ID: WP_317142614.1
• Uniprot ID: A0AA97IH35
• Organism: Endozoicomonas sp. 8E
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5209119..5219991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6910_RS17875 (P6910_17870)	-	5209312..5209644 (+)	333	WP_317142608.1	hypothetical protein	-
P6910_RS26900	-	5209800..5210153 (+)	354	WP_410493941.1	type II toxin-antitoxin system RelE/ParE family toxin	-
P6910_RS17880 (P6910_17875)	-	5210086..5210391 (+)	306	WP_317142609.1	HigA family addiction module antitoxin	-
P6910_RS17885 (P6910_17880)	-	5210529..5210903 (-)	375	WP_317142610.1	hypothetical protein	-
P6910_RS17890 (P6910_17885)	-	5210893..5211159 (-)	267	WP_317142611.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
P6910_RS17895 (P6910_17890)	-	5211566..5212456 (-)	891	WP_317142612.1	LysR family transcriptional regulator	-
P6910_RS17900 (P6910_17895)	-	5212559..5213845 (+)	1287	WP_317142613.1	serine hydrolase	-
P6910_RS17905 (P6910_17900)	pilD	5214119..5214991 (+)	873	WP_317142614.1	A24 family peptidase	Machinery gene
P6910_RS17910 (P6910_17905)	coaE	5214999..5215601 (+)	603	WP_317142615.1	dephospho-CoA kinase	-
P6910_RS17915 (P6910_17910)	-	5215636..5217258 (-)	1623	WP_317142616.1	NAD+ synthase	-
P6910_RS17920 (P6910_17915)	-	5217356..5219467 (-)	2112	WP_317142617.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32150.56 Da
• Isoelectric Point: 6.4463

>NTDB_id=808250 P6910_RS17905 WP_317142614.1 5214119..5214991(+) (pilD) [Endozoicomonas sp. 8E]
MALIELLQSSPTYFYLTLTLVGLLVGSFLNVVILRLPVMMERQWKLECLESLHPDKVPTEMEPYNLIKPDSTCPSCGHKI
RAWENIPVISYLFLKGRCSSCKTSISARYPIIEMITALLTVSIGIYFGATFQTVLLCFLVWSLVALTVIDLDTQLLPDSI
TLPLLWLGLLANSFELFIPLKDAVLGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLGALGAWIGWQMLPLIILLSSLV
GTIVAVVLIILKKQERSNPIPFGPYLAAAGFIALLWGETLVQSYLQIMGL

Nucleotide

• Length: 873 bp

>NTDB_id=808250 P6910_RS17905 WP_317142614.1 5214119..5214991(+) (pilD) [Endozoicomonas sp. 8E]
ATGGCACTCATAGAATTACTGCAATCTTCGCCCACTTACTTCTACCTAACCCTGACTCTGGTCGGCCTTCTGGTCGGTAG
CTTTCTCAATGTTGTTATTCTGCGACTGCCAGTGATGATGGAACGTCAGTGGAAGCTGGAGTGTCTGGAATCACTTCACC
CGGACAAGGTTCCCACTGAGATGGAGCCTTATAACCTGATCAAGCCTGACTCCACCTGTCCGAGCTGTGGTCACAAGATC
CGGGCCTGGGAAAATATTCCGGTGATCAGCTACCTGTTTTTGAAAGGTCGTTGTTCTTCCTGCAAAACCTCAATTTCTGC
CCGCTATCCGATCATTGAGATGATCACTGCCCTGCTGACCGTTTCTATTGGTATCTACTTTGGCGCCACTTTCCAGACAG
TTTTACTCTGCTTTTTAGTCTGGTCCCTGGTGGCATTGACCGTGATTGATCTGGACACCCAACTGCTGCCAGACAGCATT
ACCCTGCCCTTACTTTGGCTGGGCTTACTGGCCAACAGCTTTGAGTTATTTATTCCGTTGAAGGACGCGGTGCTGGGTGC
TGCTGCCGGTTATCTTTCGCTCTGGTCTGTTTACTGGTTATTCAAACTGCTGACGGGCAAAGAAGGTATGGGCTACGGCG
ACTTTAAACTACTCGGTGCGCTCGGTGCCTGGATAGGTTGGCAAATGCTGCCACTGATTATTCTGCTGTCTTCACTGGTA
GGAACGATTGTCGCAGTGGTGCTGATCATTCTGAAAAAGCAGGAACGGAGTAACCCTATCCCTTTTGGACCTTACCTGGC
CGCTGCCGGTTTTATTGCCCTGCTTTGGGGGGAAACACTGGTTCAATCTTATCTGCAGATTATGGGGCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (138-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	97.931	0.528
pilD	Vibrio campbellii strain DS40M4	53.357	97.586	0.521
pilD	Acinetobacter baumannii D1279779	51.46	94.483	0.486
pilD	Acinetobacter nosocomialis M2	51.095	94.483	0.483
pilD	Neisseria gonorrhoeae MS11	51.575	87.586	0.452