Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   P0M29_RS14980 Genome accession   NZ_CP120711
Coordinates   2944758..2944877 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain 12Y     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2939758..2949877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M29_RS14965 (P0M29_14965) - 2941370..2942053 (+) 684 WP_014416901.1 response regulator transcription factor -
  P0M29_RS14970 (P0M29_14970) - 2942040..2943473 (+) 1434 WP_103042081.1 HAMP domain-containing sensor histidine kinase -
  P0M29_RS14975 (P0M29_14975) rapC 2943626..2944774 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  P0M29_RS14980 (P0M29_14980) phrC 2944758..2944877 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  P0M29_RS14985 (P0M29_14985) - 2945025..2945120 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  P0M29_RS14990 (P0M29_14990) - 2945215..2946579 (-) 1365 WP_015239155.1 aspartate kinase -
  P0M29_RS14995 (P0M29_14995) ceuB 2946993..2947946 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  P0M29_RS15000 (P0M29_15000) - 2947936..2948883 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  P0M29_RS15005 (P0M29_15005) - 2948877..2949635 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=808196 P0M29_RS14980 WP_003156334.1 2944758..2944877(+) (phrC) [Bacillus velezensis strain 12Y]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=808196 P0M29_RS14980 WP_003156334.1 2944758..2944877(+) (phrC) [Bacillus velezensis strain 12Y]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718