Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | P4B18_RS08305 | Genome accession | NZ_CP120705 |
| Coordinates | 1694233..1695105 (-) | Length | 290 a.a. |
| NCBI ID | WP_003125204.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain NY11084 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1689233..1700105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P4B18_RS08260 (P4B18_08265) | - | 1690094..1690264 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| P4B18_RS08265 (P4B18_08270) | - | 1690290..1690739 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| P4B18_RS08270 (P4B18_08275) | - | 1690736..1691365 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| P4B18_RS08275 (P4B18_08280) | - | 1691498..1691923 (+) | 426 | WP_003116252.1 | GNAT family N-acetyltransferase | - |
| P4B18_RS08280 (P4B18_08285) | - | 1691920..1692390 (+) | 471 | WP_003103866.1 | hypothetical protein | - |
| P4B18_RS08285 (P4B18_08290) | - | 1692387..1693076 (+) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| P4B18_RS08290 (P4B18_08295) | - | 1693182..1693391 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| P4B18_RS08295 (P4B18_08300) | yacG | 1693428..1693628 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| P4B18_RS08300 (P4B18_08305) | coaE | 1693625..1694236 (-) | 612 | WP_179063299.1 | dephospho-CoA kinase | - |
| P4B18_RS08305 (P4B18_08310) | pilD | 1694233..1695105 (-) | 873 | WP_003125204.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| P4B18_RS08310 (P4B18_08315) | pilC | 1695109..1696329 (-) | 1221 | WP_003112840.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| P4B18_RS08315 (P4B18_08320) | pilB | 1696333..1698033 (-) | 1701 | WP_003112841.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| P4B18_RS08320 (P4B18_08325) | pilA | 1698265..1698717 (+) | 453 | WP_028681203.1 | pilin | Machinery gene |
| P4B18_RS08330 (P4B18_08335) | nadC | 1698916..1699764 (-) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31839.89 Da Isoelectric Point: 7.7068
>NTDB_id=807993 P4B18_RS08305 WP_003125204.1 1694233..1695105(-) (pilD) [Pseudomonas aeruginosa strain NY11084]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=807993 P4B18_RS08305 WP_003125204.1 1694233..1695105(-) (pilD) [Pseudomonas aeruginosa strain NY11084]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
TTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
TTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |