Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HXS60_RS06840 | Genome accession | NZ_AP023042 |
| Coordinates | 1314858..1315964 (+) | Length | 368 a.a. |
| NCBI ID | WP_176485116.1 | Uniprot ID | - |
| Organism | Helicobacter suis strain NHP19-4004 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1309858..1320964
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS60_RS06805 (NHP194004_13480) | - | 1310273..1310659 (-) | 387 | WP_034375045.1 | hypothetical protein | - |
| HXS60_RS06810 (NHP194004_13490) | - | 1310652..1310927 (-) | 276 | WP_034375042.1 | DUF2018 family protein | - |
| HXS60_RS06815 (NHP194004_13500) | - | 1310927..1311367 (-) | 441 | WP_006564918.1 | DNA starvation/stationary phase protection protein | - |
| HXS60_RS06820 (NHP194004_13510) | - | 1311440..1312414 (-) | 975 | WP_006564919.1 | PAS domain-containing sensor histidine kinase | - |
| HXS60_RS06825 (NHP194004_13520) | - | 1312483..1312794 (-) | 312 | WP_006564920.1 | hypothetical protein | - |
| HXS60_RS06830 (NHP194004_13530) | - | 1312791..1313828 (-) | 1038 | WP_040499354.1 | flagellar basal body P-ring protein FlgI | - |
| HXS60_RS06835 (NHP194004_13540) | comB9 | 1313917..1314861 (+) | 945 | WP_006564922.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HXS60_RS06840 (NHP194004_13550) | comB10 | 1314858..1315964 (+) | 1107 | WP_176485116.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HXS60_RS06845 (NHP194004_13560) | - | 1316017..1316754 (+) | 738 | WP_006564924.1 | (Fe-S)-binding protein | - |
| HXS60_RS06850 (NHP194004_13570) | - | 1316751..1318196 (+) | 1446 | WP_006564925.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| HXS60_RS06855 (NHP194004_13580) | - | 1318189..1318833 (+) | 645 | WP_006564926.1 | lactate utilization protein C | - |
| HXS60_RS06860 (NHP194004_13590) | - | 1318842..1319297 (+) | 456 | WP_034375034.1 | peroxiredoxin | - |
| HXS60_RS06865 (NHP194004_13600) | rfaE1 | 1319486..1320910 (-) | 1425 | WP_034375031.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 41169.58 Da Isoelectric Point: 7.4578
>NTDB_id=80798 HXS60_RS06840 WP_176485116.1 1314858..1315964(+) (comB10) [Helicobacter suis strain NHP19-4004]
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
Nucleotide
Download Length: 1107 bp
>NTDB_id=80798 HXS60_RS06840 WP_176485116.1 1314858..1315964(+) (comB10) [Helicobacter suis strain NHP19-4004]
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
56.764 |
100 |
0.582 |