Detailed information NTG0080797

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HXS60_RS06835
• Genome accession: NZ_AP023042
• Coordinates: 1313917..1314861 (+)
• Length: 314 a.a.
• NCBI ID: WP_006564922.1
• Uniprot ID: -
• Organism: Helicobacter suis strain NHP19-4004
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1308917..1319861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HXS60_RS06800 (NHP194004_13470)	-	1309383..1310288 (-)	906	WP_006564970.1	polyprenyl synthetase family protein	-
HXS60_RS06805 (NHP194004_13480)	-	1310273..1310659 (-)	387	WP_034375045.1	hypothetical protein	-
HXS60_RS06810 (NHP194004_13490)	-	1310652..1310927 (-)	276	WP_034375042.1	DUF2018 family protein	-
HXS60_RS06815 (NHP194004_13500)	-	1310927..1311367 (-)	441	WP_006564918.1	DNA starvation/stationary phase protection protein	-
HXS60_RS06820 (NHP194004_13510)	-	1311440..1312414 (-)	975	WP_006564919.1	PAS domain-containing sensor histidine kinase	-
HXS60_RS06825 (NHP194004_13520)	-	1312483..1312794 (-)	312	WP_006564920.1	hypothetical protein	-
HXS60_RS06830 (NHP194004_13530)	-	1312791..1313828 (-)	1038	WP_040499354.1	flagellar basal body P-ring protein FlgI	-
HXS60_RS06835 (NHP194004_13540)	comB9	1313917..1314861 (+)	945	WP_006564922.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HXS60_RS06840 (NHP194004_13550)	comB10	1314858..1315964 (+)	1107	WP_176485116.1	DNA type IV secretion system protein ComB10	Machinery gene
HXS60_RS06845 (NHP194004_13560)	-	1316017..1316754 (+)	738	WP_006564924.1	(Fe-S)-binding protein	-
HXS60_RS06850 (NHP194004_13570)	-	1316751..1318196 (+)	1446	WP_006564925.1	LutB/LldF family L-lactate oxidation iron-sulfur protein	-
HXS60_RS06855 (NHP194004_13580)	-	1318189..1318833 (+)	645	WP_006564926.1	lactate utilization protein C	-
HXS60_RS06860 (NHP194004_13590)	-	1318842..1319297 (+)	456	WP_034375034.1	peroxiredoxin	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36358.05 Da
• Isoelectric Point: 9.4755

>NTDB_id=80797 HXS60_RS06835 WP_006564922.1 1313917..1314861(+) (comB9) [Helicobacter suis strain NHP19-4004]
MCLRIWLLLFLGCLLVADSTAQPEEEEEEPPIYSMQDLHAIQSSFFKRERGDLDNTLFMDYRLGQTPKLRLRYAMITTLV
FSEPIREVILGDSVGFSTKMLGHERHQNSNVLLIKPLQIGIDSNLNVVGKSGKIYTFYIFSTTFTSPKHPVLNVYVSNKH
FFQSSPDQPLAKFEEKEILKSNVLESKKDTPDSTRYLKIGDASNAMWIDKTQIKRNYKVLGSRKRAWFCLWLCRIDTAKL
IKPLDIFNDAHFTYFKFDRKASQVKFPVAYKVVDGYDNPINTRIVGDYLIAEDIANKWTLREGKLHACIRRTRP

Nucleotide

• Length: 945 bp

>NTDB_id=80797 HXS60_RS06835 WP_006564922.1 1313917..1314861(+) (comB9) [Helicobacter suis strain NHP19-4004]
ATGTGTTTAAGGATTTGGCTTTTGCTTTTTTTAGGGTGTTTATTAGTGGCTGATTCTACTGCTCAGCCAGAAGAGGAGGA
AGAAGAACCTCCCATTTACTCCATGCAAGATCTGCATGCCATTCAAAGTAGTTTTTTTAAAAGAGAGCGAGGGGATCTAG
ACAACACATTATTTATGGATTATCGCTTAGGCCAAACCCCTAAATTACGCCTGCGTTATGCGATGATCACTACTTTAGTT
TTTAGTGAACCTATTAGAGAGGTGATTTTGGGCGATAGTGTAGGTTTTAGCACTAAAATGCTAGGCCATGAGCGCCACCA
AAATAGCAATGTCTTACTCATTAAACCCCTACAAATTGGTATTGATTCTAATTTAAATGTGGTGGGTAAGAGTGGTAAGA
TTTATACTTTCTATATCTTTTCAACCACCTTTACAAGCCCTAAACACCCTGTTTTAAATGTCTATGTTTCCAATAAGCAT
TTTTTCCAATCTAGCCCAGATCAACCCCTAGCTAAATTTGAAGAAAAAGAGATTTTAAAGAGCAATGTTTTAGAGAGTAA
AAAGGACACACCCGATTCTACGCGTTATCTTAAAATCGGAGATGCCAGTAATGCCATGTGGATTGATAAAACCCAAATTA
AGAGAAACTATAAAGTTTTAGGGAGTAGAAAAAGGGCTTGGTTTTGTCTGTGGCTGTGTAGAATTGATACGGCTAAACTA
ATCAAACCCCTAGACATTTTTAACGACGCTCACTTTACCTACTTTAAATTTGATCGCAAAGCCTCTCAAGTTAAATTTCC
TGTAGCCTATAAAGTTGTAGATGGGTATGATAACCCCATTAATACCCGCATTGTAGGGGATTATCTCATCGCTGAGGATA
TTGCCAATAAATGGACTCTTAGAGAGGGCAAACTCCATGCCTGTATCCGCCGTACCCGCCCATGA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (58-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	47.72	100	0.5