Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HXS60_RS01390 Genome accession   NZ_AP023042
Coordinates   268913..269152 (+) Length   79 a.a.
NCBI ID   WP_050780158.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-4004     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263913..274152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS60_RS01370 (NHP194004_02810) - 264372..265772 (-) 1401 WP_006564105.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HXS60_RS01375 (NHP194004_02820) - 265912..267087 (+) 1176 WP_064430215.1 site-specific DNA-methyltransferase -
  HXS60_RS01380 (NHP194004_02830) - 267074..267940 (+) 867 WP_006565094.1 CfrBI family restriction endonuclease -
  HXS60_RS01385 (NHP194004_02840) - 268110..268880 (+) 771 WP_034375711.1 hypothetical protein -
  HXS60_RS01390 (NHP194004_02850) comB2 268913..269152 (+) 240 WP_050780158.1 TrbC/VirB2 family protein Machinery gene
  HXS60_RS01395 (NHP194004_02860) comB3 269163..269426 (+) 264 WP_034375715.1 hypothetical protein Machinery gene
  HXS60_RS01400 (NHP194004_02870) - 269419..269766 (+) 348 WP_143440944.1 hypothetical protein -
  HXS60_RS01405 (NHP194004_02880) comB4 269779..272214 (+) 2436 WP_176486634.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HXS60_RS09665 (NHP194004_02890) - 272219..272428 (+) 210 WP_141556969.1 hypothetical protein -
  HXS60_RS01415 (NHP194004_02900) - 272438..273529 (+) 1092 WP_176486635.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8674.42 Da        Isoelectric Point: 10.3199

>NTDB_id=80784 HXS60_RS01390 WP_050780158.1 268913..269152(+) (comB2) [Helicobacter suis strain NHP19-4004]
MGVLQAGGLENLQNAIQSWLSSGSAKLILTIIFIGIGIFVWKNLDRWKEILLTVLGVVLGSLVFFGAPKLSAWLMQIFQ

Nucleotide


Download         Length: 240 bp        

>NTDB_id=80784 HXS60_RS01390 WP_050780158.1 268913..269152(+) (comB2) [Helicobacter suis strain NHP19-4004]
ATGGGAGTATTGCAAGCTGGGGGCTTGGAGAATCTGCAAAATGCCATCCAATCTTGGTTAAGTAGTGGCAGTGCCAAACT
AATTTTAACCATCATCTTCATAGGCATTGGTATCTTTGTGTGGAAAAACTTGGATCGGTGGAAAGAGATTTTGTTGACAG
TTCTAGGCGTGGTGTTAGGCTCTTTAGTCTTTTTTGGTGCGCCTAAGCTATCTGCTTGGTTGATGCAAATTTTTCAATAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

60

94.937

0.57

Multiple sequence alignment