Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HXS57_RS06795 | Genome accession | NZ_AP023039 |
| Coordinates | 1321543..1322649 (+) | Length | 368 a.a. |
| NCBI ID | WP_176485116.1 | Uniprot ID | - |
| Organism | Helicobacter suis strain NHP19-4003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1316543..1327649
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS57_RS06760 (NHP194003_13440) | - | 1316958..1317344 (-) | 387 | WP_034375045.1 | hypothetical protein | - |
| HXS57_RS06765 (NHP194003_13450) | - | 1317337..1317612 (-) | 276 | WP_176485933.1 | DUF2018 family protein | - |
| HXS57_RS06770 (NHP194003_13460) | - | 1317612..1318052 (-) | 441 | WP_006564918.1 | Dps family protein | - |
| HXS57_RS06775 (NHP194003_13470) | - | 1318125..1319099 (-) | 975 | WP_006564919.1 | sensor histidine kinase | - |
| HXS57_RS06780 (NHP194003_13480) | - | 1319168..1319479 (-) | 312 | WP_006564920.1 | hypothetical protein | - |
| HXS57_RS06785 (NHP194003_13490) | - | 1319476..1320513 (-) | 1038 | WP_040499354.1 | flagellar basal body P-ring protein FlgI | - |
| HXS57_RS06790 (NHP194003_13500) | comB9 | 1320602..1321546 (+) | 945 | WP_006564967.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HXS57_RS06795 (NHP194003_13510) | comB10 | 1321543..1322649 (+) | 1107 | WP_176485116.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HXS57_RS06800 (NHP194003_13520) | - | 1322702..1322824 (+) | 123 | Protein_1356 | (Fe-S)-binding protein | - |
| HXS57_RS06805 (NHP194003_13530) | - | 1322896..1323048 (+) | 153 | WP_415270795.1 | hypothetical protein | - |
| HXS57_RS06810 (NHP194003_13540) | - | 1323090..1323827 (+) | 738 | WP_006564924.1 | (Fe-S)-binding protein | - |
| HXS57_RS06815 (NHP194003_13550) | - | 1323824..1325269 (+) | 1446 | WP_176485934.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| HXS57_RS06820 (NHP194003_13560) | - | 1325262..1325906 (+) | 645 | WP_176485935.1 | LutC/YkgG family protein | - |
| HXS57_RS06825 (NHP194003_13570) | - | 1325915..1326370 (+) | 456 | WP_034375034.1 | peroxiredoxin | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 41169.58 Da Isoelectric Point: 7.4578
>NTDB_id=80779 HXS57_RS06795 WP_176485116.1 1321543..1322649(+) (comB10) [Helicobacter suis strain NHP19-4003]
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP
Nucleotide
Download Length: 1107 bp
>NTDB_id=80779 HXS57_RS06795 WP_176485116.1 1321543..1322649(+) (comB10) [Helicobacter suis strain NHP19-4003]
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACACATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACACATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
56.764 |
100 |
0.582 |