Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OW489_RS01035 Genome accession   NZ_AP026446
Coordinates   225880..226347 (-) Length   155 a.a.
NCBI ID   WP_015643280.1    Uniprot ID   -
Organism   Helicobacter pylori strain CHC155     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 220880..231347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW489_RS01025 (CHC155_02070) tlpB 222099..223783 (-) 1685 Protein_204 methyl-accepting chemotaxis protein TlpB -
  OW489_RS01030 (CHC155_02080) - 224000..225712 (-) 1713 WP_323849425.1 5'-nucleotidase C-terminal domain-containing protein -
  OW489_RS01035 (CHC155_02090) luxS 225880..226347 (-) 468 WP_015643280.1 S-ribosylhomocysteine lyase Regulator
  OW489_RS01040 (CHC155_02100) - 226382..227524 (-) 1143 WP_267286050.1 cystathionine gamma-synthase -
  OW489_RS01045 (CHC155_02110) - 227545..228462 (-) 918 WP_267286051.1 O-acetylserine-dependent cystathionine beta-synthase -
  OW489_RS01050 (CHC155_02120) - 228570..229148 (+) 579 WP_267286052.1 hypothetical protein -
  OW489_RS01055 (CHC155_02130) dnaK 229284..231146 (-) 1863 WP_267286053.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17648.16 Da        Isoelectric Point: 6.8403

>NTDB_id=80778 OW489_RS01035 WP_015643280.1 225880..226347(-) (luxS) [Helicobacter pylori strain CHC155]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=80778 OW489_RS01035 WP_015643280.1 225880..226347(-) (luxS) [Helicobacter pylori strain CHC155]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTGGTCGCTGAGATCATCCGCAACCACGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCGCGCGCTTTTTTAGACAAACGTGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment