Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P5655_RS14345 Genome accession   NZ_CP120681
Coordinates   2617538..2618182 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2612538..2623182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS14310 (P5655_14310) mrpB 2613730..2614161 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  P5655_RS14315 (P5655_14315) mrpC 2614161..2614502 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  P5655_RS14320 (P5655_14320) mrpD 2614495..2615976 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  P5655_RS14325 (P5655_14325) mrpE 2615982..2616458 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  P5655_RS14330 (P5655_14330) mrpF 2616458..2616742 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  P5655_RS14335 (P5655_14335) mnhG 2616726..2617100 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  P5655_RS14340 (P5655_14340) yuxO 2617139..2617519 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  P5655_RS14345 (P5655_14345) comA 2617538..2618182 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  P5655_RS14350 (P5655_14350) comP 2618263..2620572 (-) 2310 WP_277723628.1 two-component system sensor histidine kinase ComP Regulator
  P5655_RS14355 (P5655_14355) comX 2620587..2620754 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  P5655_RS14360 (P5655_14360) comQ 2620742..2621641 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  P5655_RS14365 (P5655_14365) degQ 2621826..2621966 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  P5655_RS14370 (P5655_14370) - 2622188..2622313 (+) 126 WP_003228793.1 hypothetical protein -
  P5655_RS14375 (P5655_14375) - 2622427..2622795 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=807757 P5655_RS14345 WP_003220716.1 2617538..2618182(-) (comA) [Bacillus subtilis strain DSM 10]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=807757 P5655_RS14345 WP_003220716.1 2617538..2618182(-) (comA) [Bacillus subtilis strain DSM 10]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1