Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P5655_RS10495 Genome accession   NZ_CP120681
Coordinates   1917378..1917713 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain DSM 10     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912378..1922713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS10475 (P5655_10475) gcvT 1912970..1914058 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  P5655_RS10480 (P5655_10480) hepAA 1914500..1916173 (+) 1674 WP_004398544.1 SNF2-related protein -
  P5655_RS10485 (P5655_10485) yqhG 1916194..1916988 (+) 795 WP_003230200.1 YqhG family protein -
  P5655_RS10490 (P5655_10490) sinI 1917171..1917344 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  P5655_RS10495 (P5655_10495) sinR 1917378..1917713 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  P5655_RS10500 (P5655_10500) tasA 1917806..1918591 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  P5655_RS10505 (P5655_10505) sipW 1918655..1919227 (-) 573 WP_003246088.1 signal peptidase I SipW -
  P5655_RS10510 (P5655_10510) tapA 1919211..1919972 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  P5655_RS10515 (P5655_10515) yqzG 1920244..1920570 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  P5655_RS10520 (P5655_10520) spoIITA 1920612..1920791 (-) 180 WP_003230176.1 YqzE family protein -
  P5655_RS10525 (P5655_10525) comGG 1920862..1921236 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  P5655_RS10530 (P5655_10530) comGF 1921237..1921620 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  P5655_RS10535 (P5655_10535) comGE 1921646..1921993 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  P5655_RS10540 (P5655_10540) comGD 1921977..1922408 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  P5655_RS10545 (P5655_10545) comGC 1922398..1922694 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=807736 P5655_RS10495 WP_003226345.1 1917378..1917713(+) (sinR) [Bacillus subtilis strain DSM 10]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=807736 P5655_RS10495 WP_003226345.1 1917378..1917713(+) (sinR) [Bacillus subtilis strain DSM 10]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1