Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P5655_RS05980 Genome accession   NZ_CP120681
Coordinates   1054844..1055623 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain DSM 10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1049844..1060623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS05960 (P5655_05960) trmFO 1050537..1051844 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P5655_RS05965 (P5655_05965) xerC 1051912..1052826 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  P5655_RS05970 (P5655_05970) clpQ 1052839..1053384 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  P5655_RS05975 (P5655_05975) hslU 1053392..1054804 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  P5655_RS05980 (P5655_05980) codY 1054844..1055623 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P5655_RS05985 (P5655_05985) flgB 1056003..1056392 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  P5655_RS05990 (P5655_05990) flgC 1056392..1056844 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  P5655_RS05995 (P5655_05995) fliE 1056855..1057175 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  P5655_RS06000 (P5655_06000) fliF 1057221..1058831 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  P5655_RS06005 (P5655_06005) fliG 1058844..1059860 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  P5655_RS06010 (P5655_06010) fliH 1059853..1060605 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=807729 P5655_RS05980 WP_003220850.1 1054844..1055623(+) (codY) [Bacillus subtilis strain DSM 10]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=807729 P5655_RS05980 WP_003220850.1 1054844..1055623(+) (codY) [Bacillus subtilis strain DSM 10]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467