Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P3X63_RS13550 Genome accession   NZ_CP120679
Coordinates   2626830..2627165 (+) Length   111 a.a.
NCBI ID   WP_006637528.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2621830..2632165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS13530 (P3X63_13530) gcvT 2622279..2623373 (-) 1095 WP_026587839.1 glycine cleavage system aminomethyltransferase GcvT -
  P3X63_RS13535 (P3X63_13535) - 2623957..2625636 (+) 1680 WP_026587840.1 SNF2-related protein -
  P3X63_RS13540 (P3X63_13540) - 2625640..2626434 (+) 795 WP_026587841.1 YqhG family protein -
  P3X63_RS13545 (P3X63_13545) sinI 2626620..2626796 (+) 177 WP_026587842.1 anti-repressor SinI family protein Regulator
  P3X63_RS13550 (P3X63_13550) sinR 2626830..2627165 (+) 336 WP_006637528.1 helix-turn-helix domain-containing protein Regulator
  P3X63_RS13555 (P3X63_13555) - 2627275..2628069 (-) 795 WP_277691017.1 TasA family protein -
  P3X63_RS13560 (P3X63_13560) - 2628138..2628722 (-) 585 WP_026587844.1 signal peptidase I -
  P3X63_RS13565 (P3X63_13565) tapA 2628719..2629447 (-) 729 WP_026587845.1 amyloid fiber anchoring/assembly protein TapA -
  P3X63_RS13570 (P3X63_13570) - 2629717..2630034 (+) 318 WP_026587846.1 YqzG/YhdC family protein -
  P3X63_RS13575 (P3X63_13575) - 2630326..2630511 (-) 186 WP_277691018.1 YqzE family protein -
  P3X63_RS13580 (P3X63_13580) comGG 2630583..2630948 (-) 366 WP_026587848.1 competence type IV pilus minor pilin ComGG -
  P3X63_RS13585 (P3X63_13585) comGF 2630962..2631450 (-) 489 WP_277691019.1 competence type IV pilus minor pilin ComGF -
  P3X63_RS13590 (P3X63_13590) comGE 2631359..2631706 (-) 348 WP_277691020.1 competence type IV pilus minor pilin ComGE -
  P3X63_RS13595 (P3X63_13595) comGD 2631690..2632133 (-) 444 WP_236251143.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12963.59 Da        Isoelectric Point: 5.9495

>NTDB_id=807668 P3X63_RS13550 WP_006637528.1 2626830..2627165(+) (sinR) [Bacillus sp. HSf4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=807668 P3X63_RS13550 WP_006637528.1 2626830..2627165(+) (sinR) [Bacillus sp. HSf4]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCTATAGAAAGAAACTTACAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTTGATGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAT
CTAGTACGTGACGCTATGGCTTCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAAGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937